| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,797,375 – 2,797,468 |
| Length | 93 |
| Max. P | 0.537278 |
| Location | 2,797,375 – 2,797,468 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 78.74 |
| Mean single sequence MFE | -30.53 |
| Consensus MFE | -18.31 |
| Energy contribution | -20.77 |
| Covariance contribution | 2.46 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537278 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2797375 93 + 22407834 AAUAUGAUUCGGGUUCGGA------------UUCGGAUCUAUGGCAACAUCUGUGGAACCCACGCACGUAAUACGGGCGAAUCGCGUAGAAAAUGGC------CAGGAGGC .(..(((((((((((((((------------(....))))(((....))).....))))))..((.((.....)).))))))))..)........((------(....))) ( -26.80) >DroSec_CAF1 20461 99 + 1 AAUCCGAUUCGGGUUCGGAUUC------GGAUUCGGAUCUAUGGCAACAUCUGUGGAACCCACGCACGUAAUACGGGCGAAUCGAGUAGAAAAUGGC------CAGGAGGC ....((((((((((((((((((------(....)))))))(((....))).....))))))..((.((.....)).))))))))...........((------(....))) ( -34.70) >DroSim_CAF1 21438 99 + 1 AAUCCGAUUCGGGUUCGGAUUC------GGAUUCGGAUCUAUGGCAACAUCUGUGGAACCCACGCACGUAAUACGGGCGAAUCGAGUAGAAAAUGGC------CAGGAGGC ....((((((((((((((((((------(....)))))))(((....))).....))))))..((.((.....)).))))))))...........((------(....))) ( -34.70) >DroEre_CAF1 20700 99 + 1 AAUCCGAUUCGGGUUCGGAUUC------GGAUUCGGAUCUAUGGCAACAUCUGUGGAACCCACGCACGUAAUACGGGCGAAUCGAGUAGAGAAUCGC------CAGGAGGC .....(((((((((((((((((------(....)))))))(((....))).....)))))).(((.((.....)).)))...........)))))((------(....))) ( -35.10) >DroYak_CAF1 19869 105 + 1 AAUCCGAUUCGGGUGCGGAUUCGUUUACGGAUUCGGAUCUAUGGCAACAUCUGUGGAACCCACGCACGUAAUACGGGCGAAUCGAGUAGAGAAUCGG------CAGAAGGC ...(((((((((((.((((((((....))))))))..(((((((......))))))))))).(((.((.....)).)))...........)))))))------........ ( -36.40) >DroAna_CAF1 25154 94 + 1 AAAAUAAUAAUAGAA------A------GGAUACUACGCCACAGAAACAUCUGGGGAACCCACGCACGUAAUGCGGGUGAAU-----AAAAAAUCGGAAUCGGAAUUGGAC ...............------.------.....(((((((.((((....))))((....)).((((.....))))))))...-----......(((....)))...))).. ( -15.50) >consensus AAUCCGAUUCGGGUUCGGAUUC______GGAUUCGGAUCUAUGGCAACAUCUGUGGAACCCACGCACGUAAUACGGGCGAAUCGAGUAGAAAAUCGC______CAGGAGGC ....((((((((((((((((((......)))))))))(((((((......))))))).)))..((.((.....)).))))))))........................... (-18.31 = -20.77 + 2.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:55 2006