Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,793,325 – 2,793,445 |
Length | 120 |
Max. P | 0.660002 |
Location | 2,793,325 – 2,793,445 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.39 |
Mean single sequence MFE | -29.87 |
Consensus MFE | -25.21 |
Energy contribution | -24.93 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.24 |
Mean z-score | -1.76 |
Structure conservation index | 0.84 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660002 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2793325 120 - 22407834 UAUAAUCUUCUUCUGUGUGCGGAGAUUCCUGAAGAAGCGAAGAACCAAAGAUGGAAAGGGUAAGAAGGGUGUCGACAUGAAGUCGGUACAGUUGUUGGGAUCGGCGUACAAGGAGAAAGU .......(((((((.((((((..(((.((..(...(((......(((....)))..............((..((((.....))))..)).))).)..)))))..)))))))))))))... ( -36.10) >DroVir_CAF1 18972 120 - 1 UAUUAUAUUUUUCUGUGUGCGCAGAUUCCUCAAGAAGCGAAGAACCAAAGAUGGUAAGGGUAAGAAGGGUGUCGAUAUGAAAUCGGUACAAUUAUUGGGAUCGGCAUAUAAAGAGAAAGU .......(((((((((((((...((((((..............((((....))))...(((((.....((..((((.....))))..))..))))))))))).))))))..))))))).. ( -29.40) >DroGri_CAF1 17357 120 - 1 UAUCAUAUUUUUCUGUGUGCGCAGAUUCCUUAAGAAACGAAGAACCAAAGAUGGUAAGGGUAAGAAGGGUGUCGAUAUGAAAUCGGUACAGUUAUUGGGAUCGGCAUACAAAGAGAAAGU .......(((((((.((((.((.((((((..............((((....)))).............((..((((.....))))..)).......)))))).)).)))).))))))).. ( -30.20) >DroWil_CAF1 22417 120 - 1 UAUUAUCUUCUUUUGUGUUCGGCGAUUCUUGAAGAAACGAAGAACCAAAGAUGGUAAGGGUAAGAAGGGCGUCGAUAUGAAAUCGGUACAGUUAUUAGGAUCAGCGUAUAAAGAGAAAGU ..(((((.(((((.(.((((..((.(((.....))).))..)))))))))).))))).(((...((..((.(((((.....)))))....))..))...))).................. ( -21.10) >DroMoj_CAF1 19274 120 - 1 UAUCAUAUUUUUCUGUGUGCGCAGAUUCCUGAAGAAGCGAAGAACCAAAGAUGGUAAGGGUAAGAAGGGUGUCGAUAUGAAAUCGGUACAGUUGUUGGGAUCAGCCUACAAGGAGAAAGU .......(((((((.((((.((.(((.((..(...(((.....((((....)))).............((..((((.....))))..)).))).)..))))).)).)))).))))))).. ( -30.70) >DroPer_CAF1 17227 120 - 1 UAUUAUAUUCUUCUGUGUGCGGAGGUUCCUGAAGAAGCGAAGAACCAAAGAUGGUAAGGGUAAGAAGGGUGUCGAUAUGAAAUCGGUACAGUUGUUGGGAUCGGCCUACAAGGAGAAAGU .......((((((((((.((.((...(((..(...(((.....((((....)))).............((..((((.....))))..)).))).)..))))).)).))).)))))))... ( -31.70) >consensus UAUUAUAUUCUUCUGUGUGCGCAGAUUCCUGAAGAAGCGAAGAACCAAAGAUGGUAAGGGUAAGAAGGGUGUCGAUAUGAAAUCGGUACAGUUAUUGGGAUCGGCAUACAAAGAGAAAGU .......(((((((((((((...((((((..............((((....)))).............((..((((.....))))..)).......)))))).)))))).)))))))... (-25.21 = -24.93 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:51 2006