Locus 966

Sequence ID 2L_DroMel_CAF1
Location 2,789,915 – 2,790,018
Length 103
Max. P 0.812824
window1550

overview

Window 0

Location 2,789,915 – 2,790,018
Length 103
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 87.25
Mean single sequence MFE -18.37
Consensus MFE -14.78
Energy contribution -14.74
Covariance contribution -0.04
Combinations/Pair 1.22
Mean z-score -1.76
Structure conservation index 0.80
SVM decision value 0.65
SVM RNA-class probability 0.812824
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2789915 103 + 22407834
UGGCUUAGAUGUUGACUUCUCGCAAGACCACCUAAAUAUUGGAAAAUAAAUAAUAAUGUCAGUGAAAUAAAAAGAAAAUAUAAUAUCUAAGCAAGUCCUGGUG---
..((((((((((((.....((....)).(((....((((((............))))))..)))................))))))))))))...........--- ( -19.00)
>DroSec_CAF1 13122 103 + 1
UGGCUUAGAUGUUGACUUCUUGCAAGACCACCUAAAUAUUGGAAAAUAAAUAAUAAUGUCAGUGAAAUAAAAAGAAAAUAAAAGAUCUAAGCAAUUCCUGGUA---
..((((((((.((...(((((.......(((....((((((............))))))..))).......))))).....)).))))))))...........--- ( -16.74)
>DroSim_CAF1 13223 99 + 1
UGGCUUAGAUGUUGACUUCUCGCAAGACCACCUAAAUAUUGGAAAAUAAAUAAUAAUGUCAGUGAAAUAAAAAGAAAAUAUAAUAUCUAAG----UCCUGGUA---
.(((((((((((((.....((....)).(((....((((((............))))))..)))................)))))))))))----))......--- ( -18.70)
>DroEre_CAF1 13154 106 + 1
UGGCUUAGAUGUUGACUUCUCGCAAGGACAUCUAAAUAUUAGAAAAUAAGUAAUAAUAUCAGUGAAAUUAAAACAAAAUAUAAUAUCUUUGCAAAUCCCUGAGCUA
((((((((.....((....))(((((((..((((.....))))......((..((((.((...)).))))..))...........)))))))......)))))))) ( -17.90)
>DroYak_CAF1 11972 106 + 1
UGGCUUAGAUGUUGACUUCUCGCAAGGACACCUAAAUAUUAGAAAAUAAAUAAUAAUAUCAGUGAAAUAAAAAUAAAACGUAAUAUCUAAGCACAUCCUUGUAAUA
..((((((((((((...((.(....)))(((....((((((............))))))..)))................))))))))))))(((....))).... ( -19.50)
>consensus
UGGCUUAGAUGUUGACUUCUCGCAAGACCACCUAAAUAUUGGAAAAUAAAUAAUAAUGUCAGUGAAAUAAAAAGAAAAUAUAAUAUCUAAGCAAAUCCUGGUA___
..((((((((((((.....((....)).(((....((((((............))))))..)))................)))))))))))).............. (-14.78 = -14.74 +  -0.04) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:50 2006