Locus 965

Sequence ID 2L_DroMel_CAF1
Location 2,785,987 – 2,786,107
Length 120
Max. P 0.690062
window1549

overview

Window 9

Location 2,785,987 – 2,786,107
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.94
Mean single sequence MFE -30.42
Consensus MFE -18.22
Energy contribution -19.34
Covariance contribution 1.12
Combinations/Pair 1.23
Mean z-score -2.64
Structure conservation index 0.60
SVM decision value 0.33
SVM RNA-class probability 0.690062
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2785987 120 - 22407834
UCUGCGAGAAUUUGAAAACAAUUCGAAAAGUUUCAAAAAGUAUGAAGUUGGAAAAUAUUCACUGCAUACUUUUAGGUACUUUUUUUUGAGUGGUUUCAAAUCUUUCGAUAUUUUUGUGGC
.(..(((((((((((((.......(((((((.((.(((((((((.(((.(((.....)))))).))))))))).)).)))))))((((((....))))))..)))))).)))))))..). ( -31.40)
>DroSec_CAF1 9237 118 - 1
UCUGCGAGAAUUUGAAAACAAUUCCAAAAGUAUCAAAAGGUAUGAAGUUGGAAAGUAUUCACUGCAUACUCUUAGAUACUUU--UUUGAGUGGAUUCAAAUCAUUGGAUAUUUUUGUGGC
.(..((((((((((((..((.(((.(((((((((.((..(((((.(((.(((.....)))))).)))))..)).))))))))--)..)))))..)))))(((....))))))))))..). ( -31.00)
>DroSim_CAF1 9342 118 - 1
UCUGCGAGAAUUUGAAAACAAUUCGAAAAGUAUCAAAAGGUAUGAAGUUGGAAAAUAUUCACUGCAUACACUUGAGUACUUU--UUUGAGUGGAUUCAAAUCAUUGGAUAUUUUUGUGGC
.(..((((((((((((..((.((((((((((((...((((((((.(((.(((.....)))))).))))).)))..)))).))--))))))))..)))))(((....))))))))))..). ( -30.10)
>DroEre_CAF1 9253 118 - 1
UCUGCGAGGAUUUGAAAACAAUUCAAAAAGUUUCAGAAAGUAUGAAGUGAGAACAGAUUCACUGCAUACAUUUAGCUACUUU--UUAGUGCGGUUUCAAAUUAUUGCAUGUUUUUGAGGC
..(((((.(((((((((...(((.(((((((..(.(((.(((((.((((((......)))))).))))).))).)..)))))--)))))....))))))))).)))))............ ( -31.00)
>DroYak_CAF1 8012 118 - 1
UCUGCGAGAAUUUGAAAACAAUUCAAAGAGUUUCAAGAAGUGCGAAGUGUUAUCACAUUCACUGCAUACUUUUAGGUACUUU--UUAGUGUGGUUUCAAAUUUUUGGAUAUUUUUGUGGC
....(((((((((((((.((....(((((((.((.(((((((.(.((((..........)))).).))))))).)).)))))--))....)).))))))))))))).............. ( -28.60)
>consensus
UCUGCGAGAAUUUGAAAACAAUUCAAAAAGUUUCAAAAAGUAUGAAGUUGGAAAAUAUUCACUGCAUACUUUUAGGUACUUU__UUUGAGUGGUUUCAAAUCAUUGGAUAUUUUUGUGGC
.((((((((((((((((.((......(((((.((.(((((((((.(((............))).))))))))).)).)))))........)).))))))(((....))))))))))))). (-18.22 = -19.34 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:49 2006