Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,779,516 – 2,779,662 |
Length | 146 |
Max. P | 0.978560 |
Location | 2,779,516 – 2,779,632 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 89.33 |
Mean single sequence MFE | -21.60 |
Consensus MFE | -19.64 |
Energy contribution | -19.40 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -1.49 |
Structure conservation index | 0.91 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868564 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2779516 116 - 22407834 UAUACAUACAUACUACAUAGGUAUCAACAUAACCGAGCGAUAUGCAUACAUAUAUAUACACCAGGACAUAAGGUCCACGAGUACAUUUCCCAGGAGCUAUCCAUCCUUCGGUUCAG .........(((((.....)))))......(((((((.(((......................((((.....))))................(((....)))))).)))))))... ( -20.10) >DroSec_CAF1 2893 116 - 1 UAUACAUACAUACUACACAGGUAUCCACAUAACCGAGCGAUGUGCAUACAUACAUAUACACCAGGACAUAAGGUCCACGAGUACUUUUCCCAGGAGCUAUCCAUCCUUCGGUUCAG .........(((((.....)))))......(((((((.((((((((((......)))......((((.....))))....))))........(((....)))))).)))))))... ( -21.90) >DroSim_CAF1 2856 116 - 1 UAUACAUACAUACUACAUAGGUAUCCACAUAACCGAGCGAUAUGCAUACAUACAUAUACACCUGGACAUAAGGUCCACGAGUACUUUUCCCAGGAGCUAUCCAUCCUUCGGUUCAG .........(((((.....)))))......(((((((.(((...............(((.(.(((((.....))))).).))).........(((....)))))).)))))))... ( -22.60) >DroEre_CAF1 2765 109 - 1 UAUACAUAAAU---ACAUAAGUAUCCACAUAACCGAGCGAUAUGCAUAC----AUAUACACCAGGACAUAAGGUCCACAAUUACUUUUCACAGGAGCUAUCCAUCCCUCGGUUCAG .........((---((....))))......(((((((.(((........----..........((((.....))))................(((....)))))).)))))))... ( -21.10) >DroYak_CAF1 1475 103 - 1 UAUACAUA---------CAAGUAUCCACUUAACCGAGCGAUAUGCAUAC----AUAUACACCAGGACAUAAGGUCCACAAGUACUUUUCCCAGGAGCUAUCCAUCCCUCGGUUCAG .((((...---------...))))...((.(((((((.(((........----..........((((.....))))................(((....)))))).))))))).)) ( -22.30) >consensus UAUACAUACAUACUACAUAGGUAUCCACAUAACCGAGCGAUAUGCAUACAUA_AUAUACACCAGGACAUAAGGUCCACGAGUACUUUUCCCAGGAGCUAUCCAUCCUUCGGUUCAG ..............................(((((((.(((......................((((.....))))................(((....)))))).)))))))... (-19.64 = -19.40 + -0.24)
Location | 2,779,556 – 2,779,662 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 90.22 |
Mean single sequence MFE | -31.50 |
Consensus MFE | -24.32 |
Energy contribution | -24.96 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -2.65 |
Structure conservation index | 0.77 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2779556 106 + 22407834 GGACCUUAUGUCCUGGUGUAUAUAUAUGUAUGCAUAUCGCUCGGUUAUGUUGAUACCUAUGUAGUAUGUAUGUAUAUGCCGUAUGCUGUGUUCAUACUAUGCGGUG ((((.....)))).((((((((((((((((((((((....((((.....))))....)))))).))))))))))))))))....(((((((.......))))))). ( -30.80) >DroSec_CAF1 2933 106 + 1 GGACCUUAUGUCCUGGUGUAUAUGUAUGUAUGCACAUCGCUCGGUUAUGUGGAUACCUGUGUAGUAUGUAUGUAUAUGCCGUAUGCUGUGUUCAUACUAUGCGGUG ((((.....))))..((((((((....))))))))(((((..(((...((((((((..(((((((((((....))))))..))))).)))))))))))..))))). ( -33.90) >DroSim_CAF1 2896 106 + 1 GGACCUUAUGUCCAGGUGUAUAUGUAUGUAUGCAUAUCGCUCGGUUAUGUGGAUACCUAUGUAGUAUGUAUGUAUAUGCCGUAUGCUGUGUUCAUACUAUGCCGUG ((((.....)))).((((.(((((((....)))))))))))((((..(((((((((.((((..((((((....))))))..))))..)))))))))....)))).. ( -32.70) >DroEre_CAF1 2805 99 + 1 GGACCUUAUGUCCUGGUGUAUAU----GUAUGCAUAUCGCUCGGUUAUGUGGAUACUUAUGU---AUUUAUGUAUAUGCCGUAUGCUGUGUUCAUACUAUGCGGUG ((((.....)))).(.((((((.----(((((.((((.((.(((((((((((((((....))---)))))))))...))))...)).)))).))))))))))).). ( -32.70) >DroYak_CAF1 1515 93 + 1 GGACCUUAUGUCCUGGUGUAUAU----GUAUGCAUAUCGCUCGGUUAAGUGGAUACUUG---------UAUGUAUAUGCCGUAUGCUGUGUUCAUACUAUGCGGUG ((((.....)))).(.((((((.----(((((.((((.((.((((...(((.(((....---------))).)))..))))...)).)))).))))))))))).). ( -27.40) >consensus GGACCUUAUGUCCUGGUGUAUAU_UAUGUAUGCAUAUCGCUCGGUUAUGUGGAUACCUAUGUAGUAUGUAUGUAUAUGCCGUAUGCUGUGUUCAUACUAUGCGGUG ((((.....))))....(((((.....(((((.((((.((.((((.(((((.((((...........)))).)))))))))...)).)))).)))))))))).... (-24.32 = -24.96 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:44 2006