Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,771,078 – 2,771,191 |
Length | 113 |
Max. P | 0.749724 |
Location | 2,771,078 – 2,771,191 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 76.93 |
Mean single sequence MFE | -40.70 |
Consensus MFE | -25.44 |
Energy contribution | -25.28 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.33 |
Mean z-score | -1.51 |
Structure conservation index | 0.63 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2771078 113 - 22407834 UCCGUUCCAUAUUGAAAAACCAUAAUGCGCCCAUUCUGGUGGUGGGCACCAACCUGGACAAGCUGAUGCGACGACCACUGCGUCGAAGGGGCAGCAUUGCCCACCAGUUAAAC ..................((((.((((....)))).))))((((((((((.....))....((((...(((((.......)))))......))))..))))))))........ ( -36.30) >DroVir_CAF1 1427 113 - 1 UCCGACCCAUCUUAAAACGUCGCCACGUGCCCAUCCUAGUGGUGGGUACCAAACUGGAUAUGUUGAAAACGCGCCGGCUACGUCGCUCGGGCGGCAUUGCCGGCCAAUUGGGU ....(((((......(((((..(((.(((((((((.....))))))))).....)))..)))))......(.((((((...(((((....)))))...)))))))...))))) ( -46.70) >DroSec_CAF1 831 113 - 1 UACGUUCCAUAUUGAAACGCCACCAUGUGCCCAUUCUGGUGGUUGGCACCAAGCUGGACAUGCUGAUGCGACGACCACUGCGUCGAAGCGGCAGCAUUGCCCACCAGCUGAAC ...((((.....((....(((((((.(........))))))))...))...((((((.(((((((.(((..((((......))))..))).))))).))....)))))))))) ( -37.40) >DroSim_CAF1 825 110 - 1 UACGUUCCAUAUUGAAACGCCACCAUGUGCCCAUUCUGGUGGUGGGCACCAAGCUGGACAUGCUGAUGCGACGACCACUGCGUCGAAGCGG---CAUUGCCCACCAGCUGAAC ...((((...........((((..(((....)))..))))((((((((((.....))..((((((...(((((.......)))))...)))---)))))))))))....)))) ( -39.60) >DroEre_CAF1 935 113 - 1 CACGAUCCAUUUUGAAACGCCACCAUGUCCCAAUUCUGGUGGUGGGCACCAAGCUGGAUAAGCUGGUCCGGCGACCAUUGCGUCGAAGCGGCAGAAUUGCCCACCAGCUGGAU ....(((((.((((...((((((((.(........))))))))).....)))).))))).(((((((.(((((.......)))))..(.(((......))))))))))).... ( -41.40) >DroMoj_CAF1 722 113 - 1 UGCGUCCCAUAUUGAGGCGUCGCCACGUGCCCAUCCUAGUGGUGGGCACCAAAUUGGAUAUGUUGAAAUCGCGUCGUCUGCGCCGCUCGGGCGGCAUUGCCGACCAAUUGAGC .((((.........(((((.(((...(((((((((.....))))))))).......(((........)))))).))))))))).((((.((((((...)))).))....)))) ( -42.80) >consensus UACGUUCCAUAUUGAAACGCCACCAUGUGCCCAUUCUGGUGGUGGGCACCAAGCUGGACAUGCUGAUGCGACGACCACUGCGUCGAAGCGGCAGCAUUGCCCACCAGCUGAAC ..........................(((((((((.....)))))))))..((((((...........(((((.......)))))..(.(((......)))).)))))).... (-25.44 = -25.28 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:42 2006