Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,770,669 – 2,770,776 |
Length | 107 |
Max. P | 0.874332 |
Location | 2,770,669 – 2,770,776 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 91.49 |
Mean single sequence MFE | -34.05 |
Consensus MFE | -29.71 |
Energy contribution | -30.40 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.04 |
Mean z-score | -1.83 |
Structure conservation index | 0.87 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2770669 107 + 22407834 GUUUACCACUUGCAUUUGCACUUCCUCGGCGGCCGCCAGAUGCAGUGGCCACCAGGAUAAGAAGC--AGCCGAUGGUGCAGCUACCAGAUCCAAGAUCAUUUACACCAC ((((((((.((((.(((.....((((.((.((((((........)))))).))))))...)))))--))....))))).))).....((((...))))........... ( -30.60) >DroSec_CAF1 387 105 + 1 GUUUACCACUUGCAUUUGCACUUCCUCGGCGGCCGCCAGAUGCAGUGGCCACCAGGAUAAGAAGC--AGCC--UGUUGCAGCUAGCAGAUCCAAGAUCACUUACAGCAC ........((((.((((((...((((.((.((((((........)))))).))))))..((..((--((..--..))))..)).)))))).)))).............. ( -35.00) >DroSim_CAF1 381 105 + 1 GUUUACCACUUGCAUUUGCACUUCCUCGGCGGCCGCCAGAUGCAGUGGCCACCAGGAUAAGAAGC--ACCC--UGUUGCAGCUAGCAGAUCCAAGAUCAUUUACAGCAC ........((((.((((((...((((.((.((((((........)))))).))))))..((..((--(...--...)))..)).)))))).)))).............. ( -33.30) >DroEre_CAF1 430 109 + 1 GUUUACCACUUGCAUUUGCACUUCCUCGGCGGCCGCCAGAUGCAGUGGCCACCAGGAUAAGAAGCCUAGCUAUAGCUGUAGCUGGCAGAUCCAAGAUCAUUUCUACCCC ..........(((....)))..((((.((.((((((........)))))).))))))..(((((((.((((((....))))))))).((((...))))..))))..... ( -37.30) >consensus GUUUACCACUUGCAUUUGCACUUCCUCGGCGGCCGCCAGAUGCAGUGGCCACCAGGAUAAGAAGC__AGCC__UGUUGCAGCUAGCAGAUCCAAGAUCAUUUACACCAC ........((((.((((((...((((.((.((((((........)))))).)))))).....(((..(((....)))...))).)))))).)))).............. (-29.71 = -30.40 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:41 2006