Locus 960

Sequence ID 2L_DroMel_CAF1
Location 2,769,081 – 2,769,188
Length 107
Max. P 0.669783
window1540

overview

Window 0

Location 2,769,081 – 2,769,188
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 94.77
Mean single sequence MFE -43.98
Consensus MFE -39.26
Energy contribution -39.34
Covariance contribution 0.08
Combinations/Pair 1.11
Mean z-score -1.23
Structure conservation index 0.89
SVM decision value 0.29
SVM RNA-class probability 0.669783
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2769081 107 - 22407834
CCUGUUCUCCACCCUGAUAAUGGCACCCGGCGAGCGCAUCAAGGUGCUCCUGCAGACGCAGCAGGGUCAGGGUGGCGAGCGCAAGUACAACGGCAUGAUCGACUGCG
...((((.((((((((((...((((((..((....)).....))))))(((((.......))))))))))))))).))))(((.((....(((.....)))))))). ( -45.70)
>DroSec_CAF1 4763 107 - 1
GCUGUUCUCCACCCUGAUAAUGGCGCCCGGCGAGCGCAUCAAGGUGCUCCUGCAGACGCAGCAGGGUCAGGGUGGCGAGCGCAAGUACAACGGCAUGAUCGACUGCG
(((((((.((((((((((...((((((..((....)).....))))))(((((.......))))))))))))))).))((....))...)))))............. ( -47.40)
>DroSim_CAF1 5019 107 - 1
GCUGUUCUCCACCCUGAUAAUGGCGCCCGGCGAGCGCAUCAAGGUGCUCCUGCAGACGCAGCAGGGUCAGGGUGGCGAGCGCAAGUACAACGGCAUGAUCGACUGCG
(((((((.((((((((((...((((((..((....)).....))))))(((((.......))))))))))))))).))((....))...)))))............. ( -47.40)
>DroEre_CAF1 4803 107 - 1
CCUGUUCUCCACCCUGAUAAUGGCGCCUGGCGAGCGCAUCAAAGUGCUCCUGCAAACGCAGCAGGGCCAGGGAGGCCAGCGCAAGUACAACGGCAUGAUCGACUGUG
.(((..((((..........((((.((((..((((((......))))))((((....)))))))))))).))))..)))(....)....(((((......).)))). ( -38.30)
>DroYak_CAF1 4793 107 - 1
CUUGUUCUCCACCCUGAUCAUGGCGCCCGGCGAGCGCAUCAAGGUGCUCCUGCAGACGCAGCAGGGCCAGGGAGGCCAGCGCAAGUACACCGGCAUGAUCGACUGCG
..............((((((((.(.((((((((((((......))))))((((.......)))).))).))).((...((....))...))).))))))))...... ( -41.10)
>consensus
CCUGUUCUCCACCCUGAUAAUGGCGCCCGGCGAGCGCAUCAAGGUGCUCCUGCAGACGCAGCAGGGUCAGGGUGGCGAGCGCAAGUACAACGGCAUGAUCGACUGCG
...((((.((((((((........((((.((((((((......)))))).(((....))))).)))))))))))).))))(((.((....(((.....)))))))). (-39.26 = -39.34 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:40 2006