Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,767,319 – 2,767,411 |
Length | 92 |
Max. P | 0.757537 |
Location | 2,767,319 – 2,767,411 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 77.55 |
Mean single sequence MFE | -26.23 |
Consensus MFE | -17.11 |
Energy contribution | -16.50 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.22 |
Mean z-score | -1.46 |
Structure conservation index | 0.65 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757537 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2767319 92 + 22407834 ---------ACAAUGC-----AUGCCAUUAUCUACUGACUAUAGUCCACUUUCCUAACAUUAAUACCGUAGUCGGCCAAAGCCGGCUGCAGAUCCUCCAUGGUCAA ---------....(((-----(.(((..........(((((..((...................))..)))))(((....))))))))))((((......)))).. ( -22.51) >DroPse_CAF1 2586 99 + 1 AGAAUUUAUA-------GAGUGUGCAGAGAUCUACUGGCUAUAGUCCAUUUUGCGAACAUUGAUUCCGUAGUCGGCCAGCGCUGGUUGCAGAUCUUCCAUGGUCAA ..........-------((.((((..(((((((..((((....).)))...................(((..((((....))))..)))))))))).)))).)).. ( -23.30) >DroSim_CAF1 3249 106 + 1 AGGACUAACACAAUGCUUAGUAUGCCAUUAACUACUGGCUAUAGUCCACUUUCCUGACAUUAAUGCCGUAGUCGGCCAAAGCCGGCUGCAGGUCCUCCAUGGUCAG .((((((.....((((...))))((((........))))..))))))......(((((......((((((((((((....))))))))).)))........))))) ( -37.44) >DroEre_CAF1 3030 106 + 1 AGUACUAAGAAGAGGCUUAUUAUGCCCUUAACUACUGACUAUAGUCCAUUUUCCUAACAUUAAUGCCGUAGUCAGCCAAAGCCGGCUGCAAAUCCUCCAUGGUCAG .........(((.(((.......)))))).....((((((((....((((...........))))..((((((.((....)).)))))).........)))))))) ( -24.30) >DroYak_CAF1 3002 106 + 1 AGUACUAAUAUAAGGCUCAGUCUGCCAUUAACUACUGACUAUAGUCCAUUUUCCUAACAUUAAUGCCGUAGUCGGCCAAAGCCGGCUGUAGAUCCUCCAUGGUCAG .............(((.......)))........((((((((....((((...........))))(..((((((((....))))))))..).......)))))))) ( -26.50) >DroPer_CAF1 2642 99 + 1 AGAAUUUACA-------GAGUGUGCAGAGAUCUACUGGCUAUAGUCCAUUUUGCGAACAUUGAUUCCGUAGUCGGCCAGCGCUGGUUGCAGAUCUUCCAUGGUCAA .((((...((-------(.((.(((((((....((((....))))...))))))).)).))))))).(((..((((....))))..))).((((......)))).. ( -23.30) >consensus AGAACUAACA_AA_GC_GAGUAUGCCAUUAACUACUGACUAUAGUCCAUUUUCCUAACAUUAAUGCCGUAGUCGGCCAAAGCCGGCUGCAGAUCCUCCAUGGUCAA ...................................(((((((.((...........)).........(((((((((....))))))))).........))))))). (-17.11 = -16.50 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:39 2006