Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,756,829 – 2,756,938 |
Length | 109 |
Max. P | 0.644052 |
Location | 2,756,829 – 2,756,938 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 83.42 |
Mean single sequence MFE | -11.44 |
Consensus MFE | -8.05 |
Energy contribution | -8.05 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 0.70 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644052 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2756829 109 + 22407834 AAAUUAGACGUUACAUUUGUGAAUGAAUGAUCGAUCGAAAGAAGCAAAAAUACAAAAGUGAACAUUUGAAAAUGAACAUGAUUAUGAACAUG-AAAAAGAAACAGCAAAU ......((((((.((((....)))))))).))..((....)).((.......((((.(....).))))........((((........))))-...........)).... ( -13.80) >DroSec_CAF1 175360 97 + 1 AAAUUAGACGUUACAUUUGUGAAUGAAUGAUCGAUCGAAAGAAGCAAAAAUACAAAAGUGAACAUUUGAAAAUGAA------------CAUG-AAAAGAAAACAGCAAAU .........(((.(((((.((((((.........((....))........(((....)))..)))))).)))))))------------)...-................. ( -11.40) >DroSim_CAF1 181412 93 + 1 AAUUUAGACGUUACAUUUGUGAAUGAAGGA----UCGAAAGAAGCAAAAAUACAAAAGUGAACAUUUGAAAAUGAA------------CAUG-AAAGGAAAACAGGAAAU .........(((.(((((.((((((.....----((....))........(((....)))..)))))).)))))))------------)...-................. ( -11.40) >DroEre_CAF1 193760 82 + 1 AAAUUAGACGUUACAUUUGUGAAUG--------AUCGAAAGAAGCAAAAAUACAAAAGUGAACAUUUGAAA-UGAA-------------------AAAGAAACGGCAAAU ...(((((..((((.((((((..((--------.((....))..))....)))))).))))...)))))..-....-------------------............... ( -10.00) >DroYak_CAF1 185513 89 + 1 AAAUUAGACGUUACAUUUGUGAAUG--------AUCGAAAGAAGCAAAAAUACAAAAGUGAACAUUUGAAA-UGAA------------AAUGGAAAAAGAAACAGCAAAU ..........((((.((((((..((--------.((....))..))....)))))).)))).(((((....-...)------------)))).................. ( -10.60) >consensus AAAUUAGACGUUACAUUUGUGAAUGAA_GA___AUCGAAAGAAGCAAAAAUACAAAAGUGAACAUUUGAAAAUGAA____________CAUG_AAAAAGAAACAGCAAAU ...(((((.(((.(((((.((.((..........((....)).......)).)).)))))))).)))))......................................... ( -8.05 = -8.05 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:38 2006