Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,744,456 – 2,744,552 |
Length | 96 |
Max. P | 0.528640 |
Location | 2,744,456 – 2,744,552 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 78.48 |
Mean single sequence MFE | -27.92 |
Consensus MFE | -20.79 |
Energy contribution | -19.38 |
Covariance contribution | -1.41 |
Combinations/Pair | 1.46 |
Mean z-score | -0.93 |
Structure conservation index | 0.74 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2744456 96 - 22407834 --------------UAAUUUUUUGCCUAGGUUUUGGCAUCCCACUUGGGGCGUCCGGAUGGCAAAAAGAACAAAAAGUUUAGCCUGGAACCCGUGGCCAAGGAGCUGGAG --------------...(((((((((.....((((((..(((....)))..).))))).))))))))).......(((((.((((((...))).)))....))))).... ( -27.90) >DroSec_CAF1 162913 96 - 1 --------------UAAUUUUUUGUCUAGGUUUUGGCAUCCCACUUGGGACGUCCUGAUGGCAAGAAGAACAAAAAGUUUAGCCUGGAACCGGUGGCCAAGGAGCUGGAA --------------..........(((((.(((((((.((((....))))(((((....(((.....((((.....)))).))).)))..))...)))))))..))))). ( -26.90) >DroSim_CAF1 169049 96 - 1 --------------UAAUUUUUUGUCUAGGUCUUGGCAUCCCACUUGGGACGUCCUGAUGGCAAGAAGAACAAAAAGUUUAGCCUGGAACCGGUGGCCAAGGAGCUGGAA --------------..........(((((.(((((((.((((....))))(((((....(((.....((((.....)))).))).)))..))...)))))))..))))). ( -29.40) >DroEre_CAF1 181342 110 - 1 UUUUUAAAUCAUCAUAAGUCUUUGAUCAGGUUUUGGCUUCCCACUUGGGACGCCCCGAUGGCAAGAAGAACCAAAAGUUUAGUCUGGAACCGGUGUCCAAGGAGCUGGAG ...........((...((((((((..((((((((..(((.(((.(((((....)))))))).))).))))))...........(((....)))))..)))))).)).)). ( -28.50) >DroWil_CAF1 311725 94 - 1 --------------CAAUCCUUU--UCAGGUUUUGGCUUCCCAUUUAGGGCGUCCGAAUGGUGAAAAGAAUCAAAAAUUCUCAUUAAAACCGGUGGCUAAGGAGUUGGAA --------------((((((((.--.(.((((((((.(((((((((.((....)))))))).))).(((((.....)))))..))))))))....)..))))).)))... ( -22.90) >DroYak_CAF1 172915 110 - 1 UUUAAAAAUCAUCAUAAUUCUUUGAUCAGGUUUUGGCUUCCCACUUGGGACGUCCUGAUGGCAAAAAGGACAAAAAGUUUAGCCUGGAACCGGUGGCCAAGGAGCUGGAG ...........((....(((((((..((((((((((((((((....)))).(((((..........))))).........)))).))))))..))..)))))))...)). ( -31.90) >consensus ______________UAAUUCUUUGACCAGGUUUUGGCAUCCCACUUGGGACGUCCUGAUGGCAAAAAGAACAAAAAGUUUAGCCUGGAACCGGUGGCCAAGGAGCUGGAA .........................((((.(((((((.((((....)))).)))....((((.....((((.....))))...(((....)))..)))))))).)))).. (-20.79 = -19.38 + -1.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:37 2006