Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,737,876 – 2,737,969 |
Length | 93 |
Max. P | 0.919331 |
Location | 2,737,876 – 2,737,969 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 81.75 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -18.68 |
Energy contribution | -19.69 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.18 |
Mean z-score | -2.12 |
Structure conservation index | 0.71 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919331 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2737876 93 + 22407834 CCUACCACAAUCCCGCCGACUUCCGUGAGUAGCUGCUGCCCAACUGCAUGCCCUUCCCUUU----CGAUUGCUCACUUGGGAUCCCAUUAAUUGGCA ..............(((((.....((((((((..(((((......))).))...((.....----.)))))))))).(((....)))....))))). ( -21.80) >DroSec_CAF1 156405 93 + 1 CCUACCACAAUCCCGCCGACUUCCGUGAGUAGCUGCUGCCAAACGGGGCGCCCUUCCCUUU----CGGCAACUCACUUGGGAUCCCAUUAAUUGGCA ..............(((((.....((((((......((((.((.((((......)))).))----.)))))))))).(((....)))....))))). ( -27.60) >DroSim_CAF1 160610 93 + 1 CCUACCACAAUCCCGCCGACUUCCGUGAGUAGCUGCUGCCCAACGGGGCGCCCUUCCCUUU----CGGCUACUCACUUGGGAUCCCAUUAAUUGGCA ..............(((((.....((((((((((((.((((....))))))..........----.)))))))))).(((....)))....))))). ( -33.80) >DroEre_CAF1 174676 79 + 1 CCUACCACAAUCCCGCCGACUUCCGUGAGUAGCUGCUGCCCAGCUGGGCGCCCUUCCC---CACAUGACUACUCAUUUGGGA--------------- .............((((......(....)((((((.....))))))))))......((---((.((((....)))).)))).--------------- ( -22.30) >consensus CCUACCACAAUCCCGCCGACUUCCGUGAGUAGCUGCUGCCCAACGGGGCGCCCUUCCCUUU____CGACUACUCACUUGGGAUCCCAUUAAUUGGCA .........(((((...(.....)((((((((((((.((((....))))))...............))))))))))..))))).............. (-18.68 = -19.69 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:34 2006