Locus 954

Sequence ID 2L_DroMel_CAF1
Location 2,732,307 – 2,732,425
Length 118
Max. P 0.633949
window1532

overview

Window 2

Location 2,732,307 – 2,732,425
Length 118
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 87.28
Mean single sequence MFE -25.97
Consensus MFE -19.22
Energy contribution -20.67
Covariance contribution 1.45
Combinations/Pair 1.03
Mean z-score -2.17
Structure conservation index 0.74
SVM decision value 0.21
SVM RNA-class probability 0.633949
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2732307 118 + 22407834
UUAAAGCUGCACUAUCUACAUAAGAUUAUAGUCUUAUGUAAAGUUAAACAUCUUGCUUGCAGACUGGGCUAAUUUACAUACCUAAUCUCUUAAGAUCUAGGAAGCGAUUAACUGUU-UA
...((((.........((((((((((....)))))))))).((((((.....((((((((.......))...........((((((((....)))).)))))))))))))))))))-). ( -25.00)
>DroSec_CAF1 151104 108 + 1
UUUAAACGGCACUAUC-----------AUAGUCUUAUGUAAAGUAAGAGACCUUGCUUGCAGACUGGGCUAAUUUACAUACCUAAUCUCUUAAGAUCUAGGAAGUGAUUAACUGUUGUA
.....((((((..(((-----------(((((((..(((((.(((((....))))))))))....)))))..........((((((((....)))).))))..)))))....)))))). ( -27.20)
>DroSim_CAF1 155178 108 + 1
UUAAAACGGCACUAUC-----------AUAGUCUUAUAUAAAGUAAGAGAUCUUGCUUGCAGACUGGGCUAAUUUACAUACCUAAUCUCUCAAGAUCUAGGAAGUGAUUAACUGUUGUA
.....((((((..(((-----------(((((((......(((((((....))))))).......)))))..........((((((((....)))).))))..)))))....)))))). ( -25.72)
>consensus
UUAAAACGGCACUAUC___________AUAGUCUUAUGUAAAGUAAGAGAUCUUGCUUGCAGACUGGGCUAAUUUACAUACCUAAUCUCUUAAGAUCUAGGAAGUGAUUAACUGUUGUA
.....((((((..(((............((((((..(((((.(((((....))))))))))....)))))).........((((((((....)))).))))....)))....)))))). (-19.22 = -20.67 +   1.45) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:33 2006