Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,729,719 – 2,729,829 |
Length | 110 |
Max. P | 0.901521 |
Location | 2,729,719 – 2,729,829 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 90.91 |
Mean single sequence MFE | -31.06 |
Consensus MFE | -24.04 |
Energy contribution | -22.88 |
Covariance contribution | -1.16 |
Combinations/Pair | 1.21 |
Mean z-score | -2.07 |
Structure conservation index | 0.77 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901521 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2729719 110 - 22407834 UGUAAUUUUGUGCUUAACGCUGAUUAUAUAAUCAGUGAUAAUGUGACACAGAAGGUCAGAGUUAACCAGCCAUUUCAAAUAGGGAAUUGCUCGUUUGGCCGGCCUGACAU .....(((((((((((.((((((((....)))))))).)))...).))))))).(((((.((((((.(((.(((((......))))).))).))).....)))))))).. ( -29.40) >DroSec_CAF1 148341 110 - 1 UGUAAUUUUGUGCUUAGCGCUGAUUAUAUAAUCAGUGAUAAUGUGACACAGAAGGUCAGAGUUAACCAGCCAUUUGAAAUGGGGAAUUGCUCGUUUGGCCGGCCUGACAU .....((((((((.((.((((((((....))))))))....)).).))))))).(((((.(....((.((((.....((((((......)))))))))).)))))))).. ( -31.30) >DroSim_CAF1 152369 110 - 1 UGUAAUUUUGUGCUUAGCGCUGAUUAUAUAAUCAGUGAUAAUGUGACACAGAAGGUCAGAGUUAACCAGCCAUUUGAAAUAGGGAAUUGCUCGUUUGGCCGGCCUGACAU .....((((((((.((.((((((((....))))))))....)).).))))))).(((((.(....((.((((..(((.............)))..)))).)))))))).. ( -29.92) >DroEre_CAF1 166571 109 - 1 UGUAAUUUUGUGCUUAGCUCUGAUUAUAUAAUCAGUGAUAAUGUGACACAGAAGGUCGAAGUUAAGCAGCCAUUUGA-AAAGGGAAUUACUCGUCUGGUCGACUUGGCAU ..........(((((((((((((((....))))))........((((.......)))).)))))))))((((.((((-..(((((.....)).)))..))))..)))).. ( -28.70) >DroYak_CAF1 157250 110 - 1 UGUAAUUUAGUGCUUAGCGCUGAUUAUAUAAUCAGUGAUAAUGUGACACAGAAGGUCGAAGUUAAGCAGCCGUUUCAAAAAGAGAAUUACUCGGCUGCUCGACUUGACAU .........((((.((.((((((((....))))))))....)).).))).....(((.((((..((((((((.(((.......))).....))))))))..))))))).. ( -36.00) >consensus UGUAAUUUUGUGCUUAGCGCUGAUUAUAUAAUCAGUGAUAAUGUGACACAGAAGGUCAGAGUUAACCAGCCAUUUGAAAUAGGGAAUUGCUCGUUUGGCCGGCCUGACAU .....((((((((.((.((((((((....))))))))....)).).))))))).(((((.(((..((((............(((.....)))..))))..)))))))).. (-24.04 = -22.88 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:30 2006