Locus 951

Sequence ID 2L_DroMel_CAF1
Location 2,728,647 – 2,728,750
Length 103
Max. P 0.500000
window1528

overview

Window 8

Location 2,728,647 – 2,728,750
Length 103
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 74.15
Mean single sequence MFE -21.69
Consensus MFE -2.42
Energy contribution -2.14
Covariance contribution -0.28
Combinations/Pair 1.15
Mean z-score -1.36
Structure conservation index 0.11
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2728647 103 + 22407834
UACAAGCG-AC-------UC---AACGGAAGUGGAAAACUUUGCCCAUCCGUUGCAUAUUUUUCAAAAGUACAGAUUGUCCACAAAGCAACUAUGCAUUCAAUAGUCGCAAUAA
.....(((-((-------((---((((((.(..((....))..)...)))))))..............(((.((.((((.......)))))).))).......))))))..... ( -24.10)
>DroSec_CAF1 147341 93 + 1
UACAAGCG-AC-------UC---AGCGGAAGUGGAAAACUUUGCCCAUCAGUUGCAUAUUUUUCAAAAGUACAGAUUGCCCACAAAG--------CAUUCAAUAGUCGCAA--A
.....(((-((-------(.---.((....)).(((..(((((.....(((((...(((((.....)))))..)))))....)))))--------..)))...))))))..--. ( -20.10)
>DroSim_CAF1 151326 93 + 1
UACAAGCG-AC-------UC---AGCGGAAGUGGAAAACUUUGCCCAUCAGUUGCAUAUUUUUCAAAAGUACAGAUUGCCCACAAAG--------CAUUCAAUAGUCGCAA--A
.....(((-((-------(.---.((....)).(((..(((((.....(((((...(((((.....)))))..)))))....)))))--------..)))...))))))..--. ( -20.10)
>DroEre_CAF1 165541 111 + 1
CUUAGGGGAAGGUUAACUUUGGAGGUGGAAGUGGUUAACUUUGCCUAUCAGCUGAAUAUUUCACAAAAGUACAGAUUGCC-ACAAAGCAGCAAUGCACUUAUUAUGCGAAA--A
....(((.((((((((((..............)))))))))).)))............((((.((.((((.((..((((.-.....))))...)).))))....)).))))--. ( -21.94)
>DroYak_CAF1 156079 101 + 1
UUUUAUGGAAU-------UC---AGCGGAUGUGGUAAACUUUGCCCAUCGCAUUAUUAUUUUACAAAAGUACAGAUUGCC-AGCAGGCAGCUAUGCAUUCAAUAGUCACAA--A
..((((.((((-------..---.(((.(((.((((.....)))))))))).................(((.((.(((((-....))))))).))))))).))))......--. ( -22.20)
>consensus
UACAAGCG_AC_______UC___AGCGGAAGUGGAAAACUUUGCCCAUCAGUUGCAUAUUUUUCAAAAGUACAGAUUGCCCACAAAGCA_C_AUGCAUUCAAUAGUCGCAA__A
........................((((((((.....)))))..............(((((.....))))).....)))................................... ( -2.42 =  -2.14 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:29 2006