Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,727,737 – 2,727,839 |
Length | 102 |
Max. P | 0.655976 |
Location | 2,727,737 – 2,727,839 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 92.11 |
Mean single sequence MFE | -29.23 |
Consensus MFE | -24.18 |
Energy contribution | -24.63 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.14 |
Mean z-score | -2.18 |
Structure conservation index | 0.83 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655976 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2727737 102 + 22407834 GAUGAUGAGUUAGACUGCUAGAUGUAGUGAAUUGUAGCUGCUUGUGGCAUUUCAAGCACAGUUGUUGCAAUUGUAUCUACUAAUGUUGCAGGUUUGUUUACU .......((((..(((((.....))))).))))(((((.(((((..(((((...((.(((((((...)))))))..))...)))))..)))))..).)))). ( -25.20) >DroSec_CAF1 146444 100 + 1 GAUGA--AGUUAGACCGCCAGUAGUAGUGGAUUGUAGCUGCUUGUGGCAUUUAAAGCACACAUGUUGCAGUUGUAUCUGCUAAUGUUGCAGGUUUGUUUACU .....--...((((((((((..((((((........))))))..)))).......(((.((((...((((......))))..))))))).))))))...... ( -32.40) >DroSim_CAF1 150410 100 + 1 GAUGA--AGUUAGACCGCUAGUAGUAGUGGAUUGUAGCUGCUUGUGGCAUUUAAAGCACACAUGUUGCAGUUGUAUCUGCUAAUGUUGCAGGUUUGUUUACU .....--...((((((((((..((((((........))))))..)))).......(((.((((...((((......))))..))))))).))))))...... ( -30.10) >consensus GAUGA__AGUUAGACCGCUAGUAGUAGUGGAUUGUAGCUGCUUGUGGCAUUUAAAGCACACAUGUUGCAGUUGUAUCUGCUAAUGUUGCAGGUUUGUUUACU ..........((((((((...((((((..(((((((((....((((((.......)).)))).)))))))))....)))))).....)).))))))...... (-24.18 = -24.63 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:28 2006