Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 311,494 – 311,595 |
Length | 101 |
Max. P | 0.654469 |
Location | 311,494 – 311,595 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.05 |
Mean single sequence MFE | -27.09 |
Consensus MFE | -18.42 |
Energy contribution | -19.17 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.24 |
Mean z-score | -1.76 |
Structure conservation index | 0.68 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654469 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 311494 101 + 22407834 AUCUGUGCGAUGA-------------AUUCGAAGCGGGAAGCUGCAAAAAGCUAAUGAGUAGCGCAUCAGAUA------UCACAUCAGCUCCUGGUGCCAAUUAGCGAAACGCUUUAAGU ((((((((.....-------------.......((((....)))).....((((.....))))))).))))).------...((((((...))))))......((((...))))...... ( -25.10) >DroSec_CAF1 15697 101 + 1 AUCUGAGCGAUGA-------------AUUCGAAGCGGGAAACUGCAAAAAGCUAAUGAGUAGCGCAUCUGAUA------UCACAUCAGCUCGUUGUGCCAAUUAGUGAAACGCUUUAAGU ....(((((....-------------.......((((....)))).....((((((.....(((((.(((((.------....))))).....)))))..))))))....)))))..... ( -27.50) >DroSim_CAF1 17508 101 + 1 AUCUGAGCGAUGA-------------AUUCGAAGCGGGAAACUGCAAAAAGCUAAUGAGUAGCGCAUCUGAUA------UCACAUCAGCUCGUGGUGCCAAUUAGCGAAACGCUUUAAGU ....(((((....-------------.......((((....)))).....((((((..(((.(((..(((((.------....)))))...))).)))..))))))....)))))..... ( -32.90) >DroEre_CAF1 17032 101 + 1 AUCCGACCGAUGA-------------AUUCGAAGCGGGAAACUGCAAAAAGCUAAUGAGCAGCGCAUCAGAUA------UCACAUCAGCCCGUGGUGCCAAUUAGCGAAACGCUUUAAGU .......(((...-------------..)))..((((....)))).....((((((..(((.(((....(((.------....))).....))).)))..)))))).............. ( -25.80) >DroYak_CAF1 17449 101 + 1 AUCCGAGCGAUGA-------------AUUCGAAGCGGGAAACUGCAAAAAGCUAAUGAGCAGCGCAUCAAAUA------UCACAUCAGCUCGUGGUGCCAAUUAGCGAAACGCUUUAAGU ....(((((....-------------.......((((....)))).....((((((..(((.(((........------............))).)))..))))))....)))))..... ( -29.15) >DroAna_CAF1 25360 114 + 1 AUCUGAGCCAUUUUCUCUUUGAGAUAAAACGAAA-GAAAAAUAAUAAAAAGCUAAUGAACAG--CAUCAGCUAUCAGCAUCACAUCAGCUCGUAUCGCCAAUUAGCGGAGCGCUCU---U ....((((..((((((.((((........)))))-))))).........((((.(((.....--))).))))...............((((....(((......))))))))))).---. ( -22.10) >consensus AUCUGAGCGAUGA_____________AUUCGAAGCGGGAAACUGCAAAAAGCUAAUGAGCAGCGCAUCAGAUA______UCACAUCAGCUCGUGGUGCCAAUUAGCGAAACGCUUUAAGU ....(((((........................((((....)))).....((((((..(((.(((..........................))).)))..))))))....)))))..... (-18.42 = -19.17 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:35 2006