Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,724,863 – 2,724,971 |
Length | 108 |
Max. P | 0.957427 |
Location | 2,724,863 – 2,724,971 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 91.48 |
Mean single sequence MFE | -24.22 |
Consensus MFE | -21.38 |
Energy contribution | -21.30 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.21 |
Mean z-score | -1.66 |
Structure conservation index | 0.88 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2724863 108 + 22407834 ACAAUUUAACAGUACCAUAAACCCGACAUAGACUUGCAAUUGCUAAUUAAUUCAAAUGAGUUGCUCAUGUGGAAACGCGUUCCAACCGAAAGUCUAUUGGGUUAGAUC ...................(((((((..(((((((((....)).............((.((((...(((((....)))))..)))))).))))))))))))))..... ( -27.00) >DroSec_CAF1 143671 108 + 1 ACAAUUUAACAGUACCAUAAACCCGGCAUGGACCUGCAAUUGCUAAUUAAUUCAAAUAAGUUUCUCACGUGGAAACGCGUUCCAACAGAAAGUCUAUUGGGUUAGAUC ...................((((((..((((((..((....))................(((....(((((....)))))...))).....))))))))))))..... ( -23.00) >DroSim_CAF1 146859 107 + 1 ACAAUUUAACAGUACCAUAAACCCGGCAUGGACCUGCAAUUGCUAAUUAAUUCAAAUGAGUUUCUCACGUGGAAACGCGUU-CAACCGAAAGUCUAUUGGGUUAGAUC .(((((...(((..((((.........))))..))).)))))....(((((((((..((.((((..(((((....))))).-.....)))).))..)))))))))... ( -24.20) >DroEre_CAF1 161942 108 + 1 AAAAUUUAGCAGUACCAUAAACCCGACAUGGUCUUGCAAUCGCUAAUUAACACAAAUGAGUUUUUCACGUGGAAACGCGUUCCAGCCGAAAGUCUAUUGGGUUAAAUC ........((((.(((((.........))))).)))).........(((((.(((...((.((((((((((....))))).......))))).)).))).)))))... ( -23.41) >DroYak_CAF1 151841 108 + 1 ACAAUUUAGCAGUACCAUAAACCCAACUUGAACUUGCAAUCGCUAAUUAAUUCAAAUGCGUUUCUCACGUGGAAACGCGUUCCAACCGAAAGUCUAUUGGGUUAGAUC ...................(((((((...((((..((....))..............((((((((.....))))))))))))....(....)....)))))))..... ( -23.50) >consensus ACAAUUUAACAGUACCAUAAACCCGACAUGGACUUGCAAUUGCUAAUUAAUUCAAAUGAGUUUCUCACGUGGAAACGCGUUCCAACCGAAAGUCUAUUGGGUUAGAUC ...................(((((((..(((((((((....))................(((....(((((....)))))...)))...))))))))))))))..... (-21.38 = -21.30 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:26 2006