Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,721,606 – 2,721,697 |
Length | 91 |
Max. P | 0.904130 |
Location | 2,721,606 – 2,721,697 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 86.00 |
Mean single sequence MFE | -18.50 |
Consensus MFE | -15.20 |
Energy contribution | -15.20 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.67 |
Structure conservation index | 0.82 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.904130 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2721606 91 + 22407834 CUGUAUCUGCA---------CCAGGCACACCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAGAGA--CAAAAACAACAAAAUCAU .(((.(((((.---------....))............((((((....((((((.........))))))..))))))))).)--))................ ( -18.80) >DroPse_CAF1 169742 90 + 1 AUAUACCCGU----------ACAUGCACAUCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAAAGA--CAAAAACAACAAAAUCAU ........((----------...(((.......)))..((((((....((((((.........))))))..))))))....)--)................. ( -16.40) >DroEre_CAF1 158695 90 + 1 CUGUGUCCGC----------CCAGGCACACCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAGAGA--CAAAAACAACAAAAUCAU ...(((((((----------....))............((((((....((((((.........))))))..)))))).).))--))................ ( -21.20) >DroYak_CAF1 148431 100 + 1 CUGUAUGGGCACACAUACUGCCAGGCACACCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAGAGA--CAAAAACAACAAAAUCAU ..(((((......)))))(((..((....))..)))..((((((....((((((.........))))))..)))))).....--.................. ( -22.00) >DroAna_CAF1 238665 84 + 1 ---------CAC--------ACAUGCACAUCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAAAGACACAAAAACAACAA-AGCAU ---------...--------...(((.......)))..((((((....((((((.........))))))..))))))...................-..... ( -16.20) >DroPer_CAF1 166836 90 + 1 AUAUACCCGU----------ACAUGCACAUCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAAAGA--CAAAAACAACAAAAUCAU ........((----------...(((.......)))..((((((....((((((.........))))))..))))))....)--)................. ( -16.40) >consensus CUGUAUCCGC__________ACAGGCACACCACGCAAAUGGUCAUCCUGUGGAACCAUUUAUUUUCCACUUUGGCCAAAAGA__CAAAAACAACAAAAUCAU ........................((.......))...((((((....((((((.........))))))..))))))......................... (-15.20 = -15.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:21 2006