Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,718,685 – 2,718,798 |
Length | 113 |
Max. P | 0.850193 |
Location | 2,718,685 – 2,718,798 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 77.94 |
Mean single sequence MFE | -41.35 |
Consensus MFE | -23.82 |
Energy contribution | -23.12 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.18 |
Mean z-score | -1.96 |
Structure conservation index | 0.58 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2718685 113 - 22407834 AUGUG-UGGCAUGUGGCAAUCUUACAUUCCUGGCCAGUGUCUGGCCAUAGGUGACAUAGGCUGCCCCCUGCUCCGGCUGCAAUUGCAUGGCCAAUCUCUGCUGAUGCUCGGCCU ....(-..(((.(.((((..((..((((..(((((((...)))))))..))))....))..)))).).)))..)(((((.....(((((((........))).)))).))))). ( -41.40) >DroPse_CAF1 166948 110 - 1 AUU---GGGCUUAU-CUGUACUCACAUUCCUGGCCAGCGUCUGGCCAAAGGUCACAUAGGCAGCUCCGUGCUGGGGCUGCAGCUGCAUGGCCAAUCGCUGCUGCCGCUCCGCCU ...---((((....-.(((....))).....((((((((..((((((..(((.......((((((((.....)))))))).)))...))))))..)))))..))).....)))) ( -43.90) >DroEre_CAF1 155893 108 - 1 ------UUGCAUGUGACACACUUACAUUCCUGGCCAGCGUCUGGCCAUAGGUGACAUAGGCUGCCCCCUGCUCCGGCUGCAAAUGCAGCGCCAGUCUCUGCUGAUGCUCGGCCU ------....((((((.....))))))....((((((((((.(((....((.(((...(((.((.....))....(((((....)))))))).))).))))))))))).)))). ( -38.00) >DroYak_CAF1 145344 108 - 1 ------UCACAUGUAACUAGCUUACAUUCCUGGCCAGCGUCUGGCCAUAGGUGACAUAGGCUGUCCCCUGCUCCGGCUGCAAAUGCAGCGCCAAUCGCUGCUGCUGCUCCGCCU ------....((((((.....))))))...(((((((...)))))))((((.((((.....)))).))))....(((.(((...((((((.....))))))...)))...))). ( -38.50) >DroAna_CAF1 232568 114 - 1 AAGCCCGAGUAUUUUUUUUACUUACAUUUCUGGCCAGCGUCUGGCCGUAGGUCACAUAGACGGCUCCCUGCCGCGGUUGCAGAUGCAACGCCAAUCGCUGUUGCCUCUCGGCCU ..(((.(((((.......)))))........((((((((..(((((((..(((.....)))(((.....))))))(((((....)))))))))..)))))..)))....))).. ( -42.40) >DroPer_CAF1 163922 108 - 1 AU-----GGCUUAU-CAGUACUCACAUUCCUGGCCAGUGUCUGGCCAAAGGUCACAUAGGCAGCUCCGUGCUGGGGCUGCAGCUGCAUGGCCAAUCGCUGCUGCCGCUCCGCCU .(-----(((((..-..((....)).....(((((((...))))))).))))))...(((((((.....)))(((((.(((((.((((.....)).)).))))).))))))))) ( -43.90) >consensus AU____UGGCAUGU_ACAUACUUACAUUCCUGGCCAGCGUCUGGCCAUAGGUCACAUAGGCUGCCCCCUGCUCCGGCUGCAAAUGCAUCGCCAAUCGCUGCUGCCGCUCCGCCU ..............................(((((((...))))))).((((......(((.((.....))...((((((....)))..))).......)))........)))) (-23.82 = -23.12 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:20 2006