Locus 943

Sequence ID 2L_DroMel_CAF1
Location 2,718,546 – 2,718,645
Length 99
Max. P 0.869781
window1518

overview

Window 8

Location 2,718,546 – 2,718,645
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 79.87
Mean single sequence MFE -40.67
Consensus MFE -23.85
Energy contribution -25.33
Covariance contribution 1.48
Combinations/Pair 1.28
Mean z-score -2.28
Structure conservation index 0.59
SVM decision value 0.87
SVM RNA-class probability 0.869781
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2718546 99 + 22407834
CGCUCCGAUGGAAGACUUCAGGAUGCUGCUGCAGCGCUGAGGGAAUCCCUAAAAGCUUUGCCUUUGCUGCCUCAAAAGCAGAGGGCUGUGCUGCAUCUG
...(((...)))........((((((.((.((((((((.((((...))))...)))....((((((((........))))))))))))))).)))))). ( -40.10)
>DroVir_CAF1 200664 99 + 1
CGCUCGCGGGGCAGACACCAACAAGCUGUGGAGGUGCUUAACGAGGCGCUGGCAACCUUGUCCAUGGACAGGCGGAAACAACGCGCGGUGCUGCAUCAA
.(((((..(((((..(.(((........))).).)))))..)))(((((((((...((((((....)))))).(....)...)).)))))))))..... ( -35.50)
>DroSec_CAF1 137485 99 + 1
CGCUCCGAAGGAAGACUUCAGGAUGCUGCUGCAGCGCUGAGGGAAUCCCUAAAAGCUCUGCCUUUGCUGCCUCAAAAGCAGAGGGCUGUGCUGCAUCUG
......((((.....)))).((((((.((.((((((((.((((...))))...)))....((((((((........))))))))))))))).)))))). ( -43.90)
>DroSim_CAF1 140966 99 + 1
CGCUCCGAAGGAAGACUUCGGGAUGCUGCUGCGGCGCUGAGGGAAUCCCUAAAAGCUCUGCCUUUGCUGCCUCAAAAGCAGAGGGCUGUGCUGCAUCUG
....((((((.....))))))(((((.((.((((((((.((((...))))...)))....((((((((........))))))))))))))).))))).. ( -46.90)
>DroEre_CAF1 155754 99 + 1
CGCUCCGAAGGAAGACUGCGGGAUGCUGCUGCGACGCUGAAGGAAUCCCUAAAAGCUCUGCCUGUGCUGCCUCAAAGGCAGAGGGCGGUGCUGCAUCUG
....(((.((.....)).)))(((((.((......(((..(((....)))...))).((((((...(((((.....))))).)))))).)).))))).. ( -39.20)
>DroYak_CAF1 145205 99 + 1
CGCUCCGAAGGAAGACUUCACGAUGCGGUUGCUUCGCUGAGGGAAUCCCUUAAAGCUCUGCCUUUGCUGCCUUCAAAGCAGAGGGCUGUGCUGCAUCUG
......((((.....))))..((((((((.((...((((((((...)))))..)))....((((((((........))))))))))...)))))))).. ( -38.40)
>consensus
CGCUCCGAAGGAAGACUUCAGGAUGCUGCUGCGGCGCUGAGGGAAUCCCUAAAAGCUCUGCCUUUGCUGCCUCAAAAGCAGAGGGCUGUGCUGCAUCUG
.(((((((((.....)))).))).)).(.((((((((..((((...)))).....((((((.((((......)))).))))))....)))))))).).. (-23.85 = -25.33 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:19 2006