Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,711,566 – 2,711,703 |
Length | 137 |
Max. P | 0.633373 |
Location | 2,711,566 – 2,711,663 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 77.94 |
Mean single sequence MFE | -36.90 |
Consensus MFE | -20.68 |
Energy contribution | -22.10 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.31 |
Mean z-score | -1.71 |
Structure conservation index | 0.56 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2711566 97 - 22407834 CAGAUUGCUGGCGGGCAGGAAUGGCAACACCAGGAAGGCGGUGCCCAAGAUGGGCGCUGCUGUCCAUGAGG---CGCUUUUCGAUUUGGAGGAGGUGGAG (((((((..((((..((((..((....)))).(((.((((((((((.....)))))))))).))).))...---))))...)))))))............ ( -39.90) >DroSec_CAF1 130530 97 - 1 CAGAUUGCUGGCGGGCAGGAAUGGCAACACCAGGAAGGCAGUGCCCAAGAUGGGGGCUACUGUCCAUGAGG---UGCUUUUCGAGGGCGAGGAGCUGGAG ....(((((....)))))...((....))((((((.((.(((.(((.....))).))).)).)))......---.((((((((....))))))))))).. ( -32.90) >DroSim_CAF1 133957 97 - 1 CAGAUUGCUGGCGGGCAGGAAUGGCAACACCAGGAAGGCAGUGCCCAAGAUGGGGGCUGCUGUCCAUGAGG---UGCUUUUCGAGGGCGAGAAGCUGGAG ....(((((....)))))...((....))((((((.((((((.(((.....))).)))))).)))......---.((((((((....))))))))))).. ( -39.90) >DroEre_CAF1 148685 100 - 1 CAGAUUGCUGGCGGGCAGGAACGGCAACACCAGGAAGGCAGUGCCCAAGAUGGGGGCUGCUGUCCAUGCUGUCCAGCUUUUCGAGGCGGAGGAGGUGGAG (((.((((((...........)))))).....(((.((((((.(((.....))).)))))).)))...)))((((.((((((......)))))).)))). ( -41.80) >DroYak_CAF1 137937 87 - 1 CAGAUUGCUGGCGGGCAGGAAUGGCAACACUACGAAGGCAGUGCCCAAGAUGGGCGCUGCUUGCCACGAGG---AGCUCUUCGUGGUGGA---------- ....(((((....)))))...((....))......(((((((((((.....)))))))))))(((((((((---....)))))))))...---------- ( -40.60) >DroAna_CAF1 223146 91 - 1 CAAAUUGCUGGCGGGCAGGAACGGCAUCACCAGGAAGGCGACGCACAUCAAGCGAGUCGGCGCAUAGCAAG---GACUCUUGGAGGCGGUGAAG------ ....(..(((.(..((..((...((.((.((.....)).)).))...))..))(((((.((.....))...---))))).....).)))..)..------ ( -26.30) >consensus CAGAUUGCUGGCGGGCAGGAAUGGCAACACCAGGAAGGCAGUGCCCAAGAUGGGGGCUGCUGUCCAUGAGG___AGCUUUUCGAGGCGGAGGAG_UGGAG .....((((....))))((..((....)))).(((.((((((.(((.....))).)))))).)))...........((((((......))))))...... (-20.68 = -22.10 + 1.42)
Location | 2,711,587 – 2,711,703 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 84.73 |
Mean single sequence MFE | -44.22 |
Consensus MFE | -32.56 |
Energy contribution | -32.77 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.30 |
Mean z-score | -1.97 |
Structure conservation index | 0.74 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2711587 116 - 22407834 AGAGCACCCUUUCGGCCAUUACGAAUCCCACGUAGAAGAGCAGAUUGCUGGCGGGCAGGAAUGGCAACACCAGGAAGGCGGUGCCCAAGAUGGGCGCUGCUGUCCAUGAGG---CGCUU .((((..(((.((.(((.(((((.......)))))...(((.....)))))).)).)))....((..((...(((.((((((((((.....)))))))))).))).))..)---))))) ( -47.30) >DroSec_CAF1 130551 116 - 1 AGAGCACCCUUUCGGCCAUUACGAAUCCCACGUAGAAGAGCAGAUUGCUGGCGGGCAGGAAUGGCAACACCAGGAAGGCAGUGCCCAAGAUGGGGGCUACUGUCCAUGAGG---UGCUU .(((((((......(((.(((((.......)))))...(((.....))))))((((((...((....))..........(((.(((.....))).))).))))))....))---))))) ( -42.00) >DroSim_CAF1 133978 115 - 1 AGAGCACCCUUUCGGCCAUUAC-AAUCCCACGUAGAAAAGCAGAUUGCUGGCGGGCAGGAAUGGCAACACCAGGAAGGCAGUGCCCAAGAUGGGGGCUGCUGUCCAUGAGG---UGCUU .(((((((......((((((.(-....((.(((.....(((.....))).)))))...))))))).......(((.((((((.(((.....))).)))))).)))....))---))))) ( -48.20) >DroEre_CAF1 148706 119 - 1 AGAGCACCCUUUCGGCCAUUACAAAUCCCACGUAGAAGAGCAGAUUGCUGGCGGGCAGGAACGGCAACACCAGGAAGGCAGUGCCCAAGAUGGGGGCUGCUGUCCAUGCUGUCCAGCUU .((((.........(((.((((.........))))...(((.....))))))((((((.(..(....)....(((.((((((.(((.....))).)))))).))).).)))))).)))) ( -45.20) >DroYak_CAF1 137948 116 - 1 AGAGCACCCUUUCCGCCAUUACGAAUCCCACGUAGAAGAGCAGAUUGCUGGCGGGCAGGAAUGGCAACACUACGAAGGCAGUGCCCAAGAUGGGCGCUGCUUGCCACGAGG---AGCUC .((((..(((.((((((.(((((.......)))))...(((.....))))))))).)))..((((((..((....))(((((((((.....))))))))))))))).....---.)))) ( -51.40) >DroAna_CAF1 223161 116 - 1 AGAGAACUCUCUCGGCCACAGUGAAUCCCACAUAAAAUAGCAAAUUGCUGGCGGGCAGGAACGGCAUCACCAGGAAGGCGACGCACAUCAAGCGAGUCGGCGCAUAGCAAG---GACUC ((((....))))(.(((...(((.....))).......(((.....)))))).)((..((...((.((.((.....)).)).))...))..))(((((.((.....))...---))))) ( -31.20) >consensus AGAGCACCCUUUCGGCCAUUACGAAUCCCACGUAGAAGAGCAGAUUGCUGGCGGGCAGGAAUGGCAACACCAGGAAGGCAGUGCCCAAGAUGGGGGCUGCUGUCCAUGAGG___AGCUU .((((..(((.((.(((.(((((.......)))))...(((.....)))))).)).)))...(....)....(((.((((((.(((.....))).)))))).)))..........)))) (-32.56 = -32.77 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:15 2006