Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 310,898 – 310,994 |
Length | 96 |
Max. P | 0.863785 |
Location | 310,898 – 310,994 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 97.29 |
Mean single sequence MFE | -26.04 |
Consensus MFE | -23.58 |
Energy contribution | -23.82 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.47 |
Structure conservation index | 0.91 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 310898 96 + 22407834 GUUCCUUUUCAAGUUUAAAUAUUUCGCUUUUGAUUUGGAAAACUUGAAAGAUCUCUGUCGAUAGCCAAGCUAGUGAUCUGUCGCGGGGACGAAAGG .....(((((((((((...((..(((....)))..))..))))))))))).((((((.((((((.((......))..))))))))))))(....). ( -25.40) >DroSec_CAF1 15102 96 + 1 GUUCCUUUUCAAGUUUAAAUAUUUCGCUUUUGAUUUGGAAAACUUGAAAGAUCUCUGUCGAUAGCCAAGCUAGUGAUCUGUCGCGGGGACGAAAGG .....(((((((((((...((..(((....)))..))..))))))))))).((((((.((((((.((......))..))))))))))))(....). ( -25.40) >DroSim_CAF1 16881 96 + 1 GUUCCUUUUCAAGUUUAAAUAUUUCGCUUUUGAUUUGGAAAACUUGAAAGAUCUCUGUCGAUAGCCAAGCUAGUGAUCUGUCGCGGGGACGAAAGG .....(((((((((((...((..(((....)))..))..))))))))))).((((((.((((((.((......))..))))))))))))(....). ( -25.40) >DroEre_CAF1 16427 96 + 1 GUUCCUUUUCAAGUCUAAAUAUUUCGCUUUUGAUUUGGAAAACUUGAAAGAUCUCUGUCGAUAGCCAAGCUAGUGAUCUGUCGCGGGGACGUAAGG .....((((((((((.(((........))).)))))))))).((((...(.((((((.((((((.((......))..))))))))))))).)))). ( -24.00) >DroYak_CAF1 16825 96 + 1 GUUCCUUUUCAAGUUGAAAUAUUUCCCUUUCGAUUUGGAAAACUUGAAAGAUCUCCGUCGAUAGCCAAGCUAGUGAUCUGUCGCGGGGACGUAAGG .....((((((((((((((........)))))))))))))).((((...(.((((((.((((((.((......))..))))))))))))).)))). ( -30.00) >consensus GUUCCUUUUCAAGUUUAAAUAUUUCGCUUUUGAUUUGGAAAACUUGAAAGAUCUCUGUCGAUAGCCAAGCUAGUGAUCUGUCGCGGGGACGAAAGG ...(((((((((((((...((..((......))..))..))))))))))..((((((.((((((.((......))..))))))))))))....))) (-23.58 = -23.82 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:33 2006