Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,690,851 – 2,690,956 |
Length | 105 |
Max. P | 0.782262 |
Location | 2,690,851 – 2,690,956 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 84.64 |
Mean single sequence MFE | -25.65 |
Consensus MFE | -19.25 |
Energy contribution | -20.33 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.19 |
Mean z-score | -2.70 |
Structure conservation index | 0.75 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2690851 105 + 22407834 GCCCCAGUCGCUUCACUUGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGUGCCAGUAUCAAAAACUCCUUGAUUUACUGACUCAAC-AAUAUGGGU--GCUCCUCC ((((((............(((.((((......)))).))).......((((.(.(((((((((.......))))..))))).).))))-....)))).--))...... ( -25.00) >DroSec_CAF1 110130 107 + 1 GCCCCAGUCACUCCACUUGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGAUUCAGUAUCAAAAACUCGUUGAUUUACUGGCUCAGC-AACAUGGGCGCGCUCCUCC ((((((............(((.((((......)))).))).......(((((..(((((((((.......))))..)))))..)))))-....)))).))........ ( -27.70) >DroSim_CAF1 113158 107 + 1 GCCCCAGUCACUCCACUUGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGAGCCAGUAUCAAAAACUCGUUGAUUUACUGGCUCAAC-AACAUGGGCGCGCUCCUCC ((((((............(((.((((......)))).))).......((((((((((((((((.......))))..))))))))))))-....)))).))........ ( -36.60) >DroEre_CAF1 125065 97 + 1 GCCCCAGUCACUCCACUUGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGAGCAACUAUCAAAAACUCGUUGAUUUACUAGUUCAGC-CAUAUGGGU---------- ((((.(((..(((.(((((((.((((......)))).))).....)))).)))..)))...........(((((.........)))))-.....))))---------- ( -20.20) >DroYak_CAF1 114961 98 + 1 GCCCCAGUCACUCCACUUGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGAGCAAGUAUCAAAAACUCGUUGAUUCACUGGCUCAAACAACAAGGCA---------- (((...............(((.((((......)))).)))........((((((.((((((((.......)))))..))).)))))).......))).---------- ( -21.80) >DroAna_CAF1 193361 101 + 1 GCCCUAGUCGCUCCACUCGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGAGGAAGUAUCAAAAACUCGAUGAUUUACUUGUUCAAC-AACAUAGAG------CCCC .........((((.....(((.((((......)))).))).......((((((.((((((((.........)))..))))).))))))-......)))------)... ( -22.60) >consensus GCCCCAGUCACUCCACUUGCAAAUCAAUUAUCUGAUGUGCCAAAAAAGUUGAGCAAGUAUCAAAAACUCGUUGAUUUACUGGCUCAAC_AACAUGGGC______CUCC ..((((............(((.((((......)))).))).......((((((((((((((((.......)))))..))))))))))).....))))........... (-19.25 = -20.33 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:10 2006