Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,690,387 – 2,690,492 |
Length | 105 |
Max. P | 0.668796 |
Location | 2,690,387 – 2,690,492 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.14 |
Mean single sequence MFE | -24.52 |
Consensus MFE | -16.30 |
Energy contribution | -16.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 0.66 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2690387 105 + 22407834 UUUUUGUUUGGGCAGUUUUAUGAAUUGCUUCAAUGCUCAUUUACCGGUCGGCCUAAUGGGUGCAUUGCCACAUCGCCCAGCCAC--CCAGCCAUCCAAACACCCACC-- ....((((((((((((((...))))))).................(((.((.....((((((.((......)))))))).....--)).)))..)))))))......-- ( -28.10) >DroPse_CAF1 137621 90 + 1 UUUUUGUUUGGGCAGUUUUAUGAAUUGUUUCAAUGCUCAUUUACCGGUUGGCCUAAUGGGUGCAUUGCCUC----------CAC--CCACACACCC----ACUGGC--- ....((..((((((......((((....)))).))))))..))(((((.((.....((((((.........----------)))--)))....)).----))))).--- ( -23.50) >DroEre_CAF1 124620 103 + 1 UUUUUGUUUGGGCAGUUUUAUGAAUUGCUUCAAUGCUCAUUUACCGGUCGGCCUAAUGGGUGCAUUGCCACAUCGCCCAGACAC--CCACACGCCC----ACACGCCCG .........((((.((...((((...((......))))))..))..((.(((....(((((((...((......))...).)))--)))...))).----))..)))). ( -27.50) >DroYak_CAF1 114508 97 + 1 UUUUUGUUUGGGCAGUUUUAUGAAUUGCUUCAAUGCUCAUUUACCGGUCGGCCUAAUGGGUGCAUUGCCACAACGCCCAACCAAAUCCAG----CC----AAACA---- ....((((((((((((((...))))))).................(((.(((......(((.....))).....)))..)))........----))----)))))---- ( -22.90) >DroAna_CAF1 191790 89 + 1 UUUUCUUUGGGGCAGUUUUAUGAAUUGCUUCAAUGCUCAUUUACCGGUCGGCCUAAUGGGUGCAUUGCCGUAUUGCCGUAAUAU--CCAC----C-------------- ......((((((((((((...))))))))))))...........((((((((..((((....))))))))....))))......--....----.-------------- ( -21.60) >DroPer_CAF1 134490 90 + 1 UUUUUGUUUGGGCAGUUUUAUGAAUUGUUUCAAUGCUCAUUUACCGGUUGGCCUAAUGGGUGCAUUGCCUC----------CAC--CCACACACCC----ACUGGC--- ....((..((((((......((((....)))).))))))..))(((((.((.....((((((.........----------)))--)))....)).----))))).--- ( -23.50) >consensus UUUUUGUUUGGGCAGUUUUAUGAAUUGCUUCAAUGCUCAUUUACCGGUCGGCCUAAUGGGUGCAUUGCCACAUCGCCCA__CAC__CCACACACCC____ACACGC___ ..........((((((....((((....))))..(((((((..((....))...)))))))..))))))........................................ (-16.30 = -16.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:09 2006