Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,686,517 – 2,686,610 |
Length | 93 |
Max. P | 0.941338 |
Location | 2,686,517 – 2,686,610 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.92 |
Mean single sequence MFE | -24.80 |
Consensus MFE | -12.75 |
Energy contribution | -13.50 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.15 |
Mean z-score | -2.39 |
Structure conservation index | 0.51 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2686517 93 + 22407834 AAAAGGUGAAUCAGUAAAAGUGGAUUUCAACCCC-CCCGGAGUGAAGUCCUCUUUGGCAAAAUCUGAUUGUUAAUGAA--------------------------AAACUAUACAUGAAAU ........((((((..((((.((((((((..((.-...))..)))))))).))))........)))))).........--------------------------................ ( -20.10) >DroSec_CAF1 105811 94 + 1 AAAAGGUGAAUCAGUAAAAGUGGAUUUCAACGCCAUGCGGGGUGAAGUCCUCUUUGGGAAAAUCAGAUUGUUAAUGGG--------------------------AAACUAUGCAAGAAAU ....(((...((....((((.((((((((.(.((....)).))))))))).))))..))..)))...((((..((((.--------------------------...))))))))..... ( -26.00) >DroSim_CAF1 107554 94 + 1 AAAAGGUGAAUCAGUAAAAGUGGAUUUCAACGCCAUGCGGAGUGAAGUCCUCUUUGGGAAAAUCAGAUUGUUAUUGGG--------------------------AAACUAUGCAAGAAAU ....(((...((....((((.((((((((.(((...)))...)))))))).))))..))..)))...((((...(((.--------------------------...))).))))..... ( -25.60) >DroYak_CAF1 110575 117 + 1 ---UGGUGAAUCGGUAAAAGUGGAUUUUAACCCUGUGCGGAUUGAACUCAACUUUGGGAAAAUCCAAUUGUUAUUGGGAAACUUGUAAGCAUCUACUUUAGCCAGAACUAUACAUGAAAU ---((((.....(((.((((((((...........((((((((...((((....))))..))))).....((((.((....)).))))))))))))))).)))...)))).......... ( -27.50) >consensus AAAAGGUGAAUCAGUAAAAGUGGAUUUCAACCCCAUGCGGAGUGAAGUCCUCUUUGGGAAAAUCAGAUUGUUAAUGGG__________________________AAACUAUACAAGAAAU ........((((((..((((.((((((((...((....))..)))))))).))))........))))))................................................... (-12.75 = -13.50 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:08 2006