Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,685,552 – 2,685,644 |
Length | 92 |
Max. P | 0.712609 |
Location | 2,685,552 – 2,685,644 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 85.73 |
Mean single sequence MFE | -20.93 |
Consensus MFE | -20.68 |
Energy contribution | -20.23 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.19 |
Structure conservation index | 0.99 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712609 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2685552 92 + 22407834 AACGCCAGGAACGGAAGUCAUUGAGGCUAUCAGACGGAGACACGCUUCCGUUUCUCUACUUGAACAGUUCCCUCCA-------UUUUACUUUUUCUCCU ......((((..((((((.((.((((((.((((..(((((.(((....))).)))))..))))..))...)))).)-------)...))))))..)))) ( -20.40) >DroPse_CAF1 132485 86 + 1 AACGCCAGGAACGGAAGCCAUUGAGGCUAUCGGACGGAGACACGCUUCCGUUUCUCUACUUGAAC---UCCCUCCU-------CCC---UCCCCCCCCA ......((((((((((((..((((.....))))..(....)..))))))))))))..........---........-------...---.......... ( -21.10) >DroSec_CAF1 104868 92 + 1 AACGCCAGGAACGGAAGUCAUUGAGGCUAUCAGACGGAGACACGCUUCCGUUUCUCUACUUGAACAGUUCCCUCCA-------UUUUACUUUUUCUCCU ......((((..((((((.((.((((((.((((..(((((.(((....))).)))))..))))..))...)))).)-------)...))))))..)))) ( -20.40) >DroSim_CAF1 106598 92 + 1 AACGCCAGGAACGGAAGUCAUUGAGGCUAUCAGACGGAGACACGCUUCCGUUUCUCUACUUGAACAGUUCCCUCCA-------UUUUACUUUUUCUCCU ......((((..((((((.((.((((((.((((..(((((.(((....))).)))))..))))..))...)))).)-------)...))))))..)))) ( -20.40) >DroEre_CAF1 119746 99 + 1 AACGCCAGGAACGGAAGUCAUUGAGGCUAUCAGACGGAGACACGCUUCCGUUUCUCUACUUGAACAGUUCCCUCCUUUCGUUUUUUUUUUCUUCUUCCU ((((..((((..(((((((.....)))).((((..(((((.(((....))).)))))..)))).....))).))))..))))................. ( -22.20) >DroPer_CAF1 129330 82 + 1 AACGCCAGGAACGGAAGCCAUUGAGGCUAUCGGACGGAGACACGCUUCCGUUUCUCUACUUGAAC---UCCCUCCU--------------CCCCCCCCA ......((((((((((((..((((.....))))..(....)..))))))))))))..........---........--------------......... ( -21.10) >consensus AACGCCAGGAACGGAAGUCAUUGAGGCUAUCAGACGGAGACACGCUUCCGUUUCUCUACUUGAACAGUUCCCUCCA_______UUUUACUCUUCCUCCU ......((((((((((((..((((.....))))..(....)..))))))))))))............................................ (-20.68 = -20.23 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:05 2006