Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 309,464 – 309,570 |
Length | 106 |
Max. P | 0.776820 |
Location | 309,464 – 309,570 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 89.75 |
Mean single sequence MFE | -30.50 |
Consensus MFE | -24.08 |
Energy contribution | -25.00 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.08 |
Mean z-score | -1.69 |
Structure conservation index | 0.79 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.776820 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 309464 106 - 22407834 GUACGUGAGUACAGCGUCAAAUCGUCCGGUCUCGGAACGCGCGCAUGUGCCACAAAA---AAAUAGAGGAACAAAA---ACCGUCGAGAAGAGGAA-----GCCCAGAUAUA--UGGGU ((((....))))............(((..((((((...((((....)))).......---.......((.......---.)).))))))...))).-----(((((......--))))) ( -30.40) >DroSec_CAF1 13724 106 - 1 GUACGUGAGUACAGCGUCAAAUCGUCCGGUCUCGGAACGCGCGCAUGUGCCACAAAA---AAAUAGAGGAACAAAA---ACCGCCGAGAAGGGGAA-----GCCCAGAUAUA--UGGGU ((((....)))).(((......)))((..((((((...((((....)))).......---.......((.......---.)).))))))..))...-----(((((......--))))) ( -32.70) >DroSim_CAF1 15471 106 - 1 GUACGUGAGUACAGCGUCAAAUCGUCCGGUCUCGGAACGCGCGCAUGUGCCACAAAA---AAAUAGAGGAACAAAA---ACCGCCGAGAAGAGGAA-----GCCCAGAUAUA--UGGGU ((((....))))............(((..((((((...((((....)))).......---.......((.......---.)).))))))...))).-----(((((......--))))) ( -33.00) >DroEre_CAF1 14351 106 - 1 GUACGUGAGUACAGCGUCAAAUCGUCCGGACUCGGAACGCGCGCAUGUGCCACAAAA---AAAUAGAGGAACAAAA---ACCGCCGAGAAGAGGAA-----GCCCAGAUACA--UGGGU ((((....))))............(((...(((((...((((....)))).......---.......((.......---.)).)))))....))).-----(((((......--))))) ( -29.80) >DroAna_CAF1 22331 118 - 1 GUACGUGAGUACAGCGUCAAAUUGUCCGGACUCG-AACGCGCGCAUGUGCCACAAAAAAAAAAUCGAGGAACAAAAGCAACAAUCGAAAACAGGAAGGGACGCCUAGAUACCACCGGGU ((((....)))).(((((......(((....(((-(....((...(((.((................)).)))...)).....)))).....)))...)))))......(((....))) ( -26.59) >consensus GUACGUGAGUACAGCGUCAAAUCGUCCGGUCUCGGAACGCGCGCAUGUGCCACAAAA___AAAUAGAGGAACAAAA___ACCGCCGAGAAGAGGAA_____GCCCAGAUAUA__UGGGU ((((....))))............(((..((((((...((((....)))).................((...........)).))))))...)))......(((((........))))) (-24.08 = -25.00 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:32 2006