Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,669,885 – 2,670,000 |
Length | 115 |
Max. P | 0.789438 |
Location | 2,669,885 – 2,670,000 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.76 |
Mean single sequence MFE | -32.01 |
Consensus MFE | -10.87 |
Energy contribution | -14.27 |
Covariance contribution | 3.40 |
Combinations/Pair | 1.29 |
Mean z-score | -1.87 |
Structure conservation index | 0.34 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2669885 115 + 22407834 GUUCCACUUCCUCCUAUUUCGCAGUUGGGAUGGCUGUUUUUAU-----CAUUGGCCAUUCGCUGCUGUUGGAUAGUUUACUUUAUAUAUUUGCUGGACGUUGCCAUCAGCUUUUCGUGGG ...((((......(((((..(((((.((((((((((.......-----...))))))))).).)))))..)))))................(((((.........))))).....)))). ( -32.00) >DroSim_CAF1 90879 115 + 1 GUUCCACUUCCUCCUAUUUCGCAGUUGGGAUGGCUGUUUUUAU-----CAUUGGCCAUUCGCUGCUGUUGGAUAGUUUACAUUAUAUAUUUGCUGGACGUUGCCGUCAGCUUUUCGUGGG ...((((......(((((..(((((.((((((((((.......-----...))))))))).).)))))..)))))................((((.(((....))))))).....)))). ( -35.70) >DroEre_CAF1 103734 115 + 1 GUGCCACUUCCUCCAAUUUCGCAAUUGAGAUGGCUGCUUUUAU-----CAUUGGCGCUUCGCUGCUGCUGGAUAGCUUACUUUAUAUAUUUGCUGGAGGUUGCCAUCAACUUUUCAUGGG ...(((.......(((((....))))).((((((.(((((...-----..(..((((......)).))..).((((...............))))))))).)))))).........))). ( -26.76) >DroWil_CAF1 170321 115 + 1 GUUCCUUUACCGUCU--UCGGCA---AAGAUAUAUUCUUUUAUAGCAUUCAUUGCAUUGCGUGUCAUCUGGAUUCUAUAUUUUAGCUAUAUGCUAAGCCGAGGCAUCGGUUUUCUGUAUA ........((((.((--((((((---((((.....)))))(((((.(((((.(((((...))).))..))))).)))))..(((((.....))))))))))))...)))).......... ( -29.90) >DroYak_CAF1 93505 115 + 1 GUGCCACUUCCUCCUGUUUCGCAGUGGAGAUGGCUGUUCCUAU-----CAUUGGCCAUUCGCUGCUGCUGGAUAGCUUACAUUAUGUAUUUGCUGGAAGUUGCCAUCAGCUUUUCAUGGG (.((.(((((((((.((...((((((..((((((((.......-----...)))))))))))))).)).))).(((.(((.....)))...))))))))).)))................ ( -35.70) >consensus GUUCCACUUCCUCCUAUUUCGCAGUUGAGAUGGCUGUUUUUAU_____CAUUGGCCAUUCGCUGCUGCUGGAUAGUUUACUUUAUAUAUUUGCUGGACGUUGCCAUCAGCUUUUCGUGGG ...((((......((((((.(((((.(.(((((((.................)))))).).).))))).))))))................(((((.........))))).....)))). (-10.87 = -14.27 + 3.40)
Location | 2,669,885 – 2,670,000 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.76 |
Mean single sequence MFE | -26.50 |
Consensus MFE | -8.55 |
Energy contribution | -11.71 |
Covariance contribution | 3.16 |
Combinations/Pair | 1.26 |
Mean z-score | -1.70 |
Structure conservation index | 0.32 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554534 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2669885 115 - 22407834 CCCACGAAAAGCUGAUGGCAACGUCCAGCAAAUAUAUAAAGUAAACUAUCCAACAGCAGCGAAUGGCCAAUG-----AUAAAAACAGCCAUCCCAACUGCGAAAUAGGAGGAAGUGGAAC .((((.....(((((((....))).))))...................(((....((((.(.(((((.....-----.........))))).)...))))......)))....))))... ( -28.24) >DroSim_CAF1 90879 115 - 1 CCCACGAAAAGCUGACGGCAACGUCCAGCAAAUAUAUAAUGUAAACUAUCCAACAGCAGCGAAUGGCCAAUG-----AUAAAAACAGCCAUCCCAACUGCGAAAUAGGAGGAAGUGGAAC .((((.....(((((((....))).))))...................(((....((((.(.(((((.....-----.........))))).)...))))......)))....))))... ( -30.04) >DroEre_CAF1 103734 115 - 1 CCCAUGAAAAGUUGAUGGCAACCUCCAGCAAAUAUAUAAAGUAAGCUAUCCAGCAGCAGCGAAGCGCCAAUG-----AUAAAAGCAGCCAUCUCAAUUGCGAAAUUGGAGGAAGUGGCAC .((((........((((((........((...(((.....))).(((....))).)).(((...))).....-----.........))))))((((((....)))))).....))))... ( -20.90) >DroWil_CAF1 170321 115 - 1 UAUACAGAAAACCGAUGCCUCGGCUUAGCAUAUAGCUAAAAUAUAGAAUCCAGAUGACACGCAAUGCAAUGAAUGCUAUAAAAGAAUAUAUCUU---UGCCGA--AGACGGUAAAGGAAC ...........((..((((((((((((((.....)))))..(((((.((.((..((.((.....)))).)).)).)))))(((((.....))))---))))))--....))))..))... ( -23.00) >DroYak_CAF1 93505 115 - 1 CCCAUGAAAAGCUGAUGGCAACUUCCAGCAAAUACAUAAUGUAAGCUAUCCAGCAGCAGCGAAUGGCCAAUG-----AUAGGAACAGCCAUCUCCACUGCGAAACAGGAGGAAGUGGCAC .((.......((((..(....)...))))...............(((((...((....))..))))).....-----...))....((((..(((.(((.....)))..)))..)))).. ( -30.30) >consensus CCCACGAAAAGCUGAUGGCAACGUCCAGCAAAUAUAUAAAGUAAACUAUCCAGCAGCAGCGAAUGGCCAAUG_____AUAAAAACAGCCAUCUCAACUGCGAAAUAGGAGGAAGUGGAAC .((((.....(((((((....))).))))...................(((....((((...(((((...................))))).....))))......)))....))))... ( -8.55 = -11.71 + 3.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:00 2006