Locus 925

Sequence ID 2L_DroMel_CAF1
Location 2,657,421 – 2,657,516
Length 95
Max. P 0.760994
window1489

overview

Window 9

Location 2,657,421 – 2,657,516
Length 95
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 78.81
Mean single sequence MFE -28.07
Consensus MFE -13.66
Energy contribution -14.30
Covariance contribution 0.64
Combinations/Pair 1.35
Mean z-score -2.27
Structure conservation index 0.49
SVM decision value 0.50
SVM RNA-class probability 0.760994
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2657421 95 + 22407834
AGCGUCUCAAAUGAACGCGCCUGUCUCAGGACACCUGUCUCCCUU--UUU-UCCACCU------GAAGCU--GUGAAAUAU----AUUCACAAUGCUGUAGGGGAGCAAC--------
.((((.((....))))))((.((((....))))............--...-(((.(((------(.((((--(((((....----.))))))..))).)))))))))...-------- ( -27.40)
>DroSec_CAF1 78285 95 + 1
AGCGUCUCAAAUGAACGCGGCUGUCUAAGGACACCUGUCCCCCUU--UUU-UCCACCU------GAAGCU--GUGAAAUAU----AUUCACAAUGCUGAAGGGGAGCAAC--------
.((((.((....))))))((.((((....))))))((..((((((--(..-.......------..((((--(((((....----.))))))..))))))))))..))..-------- ( -31.00)
>DroSim_CAF1 79352 94 + 1
AGCGUCUCAAAUGAACGCGGCUGUCUCAGGACACCUGUCCCCCUU--UUU-UCCACCU------GAAGCU--GUGAAAUAU----AUUCACAAUGCUGAAG-GGAGCAAC--------
.((((.((....))))))...((.(((.((((....)))).....--...-....(((------..((((--(((((....----.))))))..)))..))-))))))..-------- ( -27.50)
>DroEre_CAF1 86615 97 + 1
AGCGUCUCAAAUGAACGCGCCUGUCUCAGGACACCUGUCCCCCCUUUUUU-UCCACCU------GAAGCU--GUGAAAUAU----AUUCACAGUGUUCGAGGGGAGCAAC--------
.((((.((....))))))((........((((....))))((((((...(-((.....------)))(((--(((((....----.))))))))....)))))).))...-------- ( -31.00)
>DroYak_CAF1 81696 98 + 1
AGCGUCUCAAAUGAACGCGCCUGUCUCAGGACACCUGUCCCCCCUUUUUUCUCCACCU------GAAGCU--GUGAAAUAU----AUUCACAGUGUUCAAGGGGAGCAAC--------
.((((.((....))))))((........((((....))))((((((..(((.......------)))(((--(((((....----.))))))))....)))))).))...-------- ( -31.50)
>DroAna_CAF1 130628 113 + 1
AGCGUCCCAAAUAAACAUGACUUUCCCUGGAAACUUGACCUCUUU--CCA-ACCACCUUCAUAUGAACAUAGGCGAAAUAUACCUAUUCAUGGCCAUGUAGAGG--UAACUUGACAUC
...(((.....................((((((.........)))--)))-...((((..(((((..((((((.........))))....))..)))))..)))--).....)))... ( -20.00)
>consensus
AGCGUCUCAAAUGAACGCGCCUGUCUCAGGACACCUGUCCCCCUU__UUU_UCCACCU______GAAGCU__GUGAAAUAU____AUUCACAAUGCUGAAGGGGAGCAAC________
.((((.((....))))))...((((....))))..((..((((((.....................(((...(((((.........)))))...))).))))))..)).......... (-13.66 = -14.30 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:52 2006