Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,652,521 – 2,652,617 |
Length | 96 |
Max. P | 0.758279 |
Location | 2,652,521 – 2,652,617 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 82.08 |
Mean single sequence MFE | -27.31 |
Consensus MFE | -16.85 |
Energy contribution | -18.33 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.29 |
Mean z-score | -2.12 |
Structure conservation index | 0.62 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656755 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2652521 96 + 22407834 UUCGCUUCCUUCGCUGUUGGCAGUUCUCGCAUUUAAUUGCAGUAUAAAUGUCUGAAAUGGCAAACACAAAGGAUGUGCGAACCGGGAUGGAAAUCU (((((.(((((.(.((((.((..(((..(((((((.........)))))))..)))...)).))))).)))))...)))))...((((....)))) ( -27.40) >DroSec_CAF1 73376 96 + 1 UUCGCUUCCUUCGCUGUUUGCAGCUCCCGCAUUUAAUUGCAGUAUAAAUGCCUGAAAUGGCAAACACAAAGGAUGUGCGAACCGGGAUGGAAAUCU .....((((.((.(.(((((((..(((.(((......)))........((((......))))........)))..))))))).).)).)))).... ( -29.80) >DroSim_CAF1 74416 96 + 1 UUCGCUUCCUUCGCUGUUUGCAGCUCCCGCAUUUAAUUGCAGUAUAAAUGCCUGAAAUGGCAAACACAAAGGAUGUGCGAACCGGGAUGGAAAUCU .....((((.((.(.(((((((..(((.(((......)))........((((......))))........)))..))))))).).)).)))).... ( -29.80) >DroEre_CAF1 81746 96 + 1 UUCGUUUCCUUCGCUGUUUGCAGCUUCCGCAUUUAAAUUUAGUAUGAAUGCCUGAAAUGGCAAACACAAAGGAUGUGCGAAUCGGGAUGGAAAUCU (((((.(((((.(.(((((((...(((.(((((((.........)))))))..)))...)))))))).)))))...)))))...((((....)))) ( -29.20) >DroYak_CAF1 76781 82 + 1 UUCGCUUCCUUUGCUGUUUGCAGCUUCCGCAUUUAAUUGCAGUAUAAAUG--------------CACAAAGGAUGUGCGAACCGGGAUGGAAAUCU (((((.((((((((((....))))....(((((((.........))))))--------------)..))))))...)))))...((((....)))) ( -26.40) >DroAna_CAF1 118752 84 + 1 UGCGCUUCCUUCUUUGUUUGCAGCCCCUCCAUUUAAUUGCAGCAUUAAUGCCUGAAAUAGCAACAACAAAGGACGUGGGAG------UGG------ ..(((((((((((((((((((.((..............)).(((....)))........)))..)))))))))...)))))------)).------ ( -21.24) >consensus UUCGCUUCCUUCGCUGUUUGCAGCUCCCGCAUUUAAUUGCAGUAUAAAUGCCUGAAAUGGCAAACACAAAGGAUGUGCGAACCGGGAUGGAAAUCU .....((((.((.(.(((((((..(((.(((......)))........((((......))))........)))..))))))).).)).)))).... (-16.85 = -18.33 + 1.48)
Location | 2,652,521 – 2,652,617 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.08 |
Mean single sequence MFE | -26.07 |
Consensus MFE | -17.30 |
Energy contribution | -20.00 |
Covariance contribution | 2.70 |
Combinations/Pair | 1.14 |
Mean z-score | -2.18 |
Structure conservation index | 0.66 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.758279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2652521 96 - 22407834 AGAUUUCCAUCCCGGUUCGCACAUCCUUUGUGUUUGCCAUUUCAGACAUUUAUACUGCAAUUAAAUGCGAGAACUGCCAACAGCGAAGGAAGCGAA ...............(((((...(((((((((((.((..((((.(.((((((.........)))))))))))...)).)))).))))))).))))) ( -23.20) >DroSec_CAF1 73376 96 - 1 AGAUUUCCAUCCCGGUUCGCACAUCCUUUGUGUUUGCCAUUUCAGGCAUUUAUACUGCAAUUAAAUGCGGGAGCUGCAAACAGCGAAGGAAGCGAA .(.(((((.(((((((..(((((.....)))))..))).......(((((((.........)))))))))))((((....))))...))))))... ( -33.50) >DroSim_CAF1 74416 96 - 1 AGAUUUCCAUCCCGGUUCGCACAUCCUUUGUGUUUGCCAUUUCAGGCAUUUAUACUGCAAUUAAAUGCGGGAGCUGCAAACAGCGAAGGAAGCGAA .(.(((((.(((((((..(((((.....)))))..))).......(((((((.........)))))))))))((((....))))...))))))... ( -33.50) >DroEre_CAF1 81746 96 - 1 AGAUUUCCAUCCCGAUUCGCACAUCCUUUGUGUUUGCCAUUUCAGGCAUUCAUACUAAAUUUAAAUGCGGAAGCUGCAAACAGCGAAGGAAACGAA ...............((((....((((((((((((((..((((..(((((.............))))).))))..))))))).)))))))..)))) ( -25.42) >DroYak_CAF1 76781 82 - 1 AGAUUUCCAUCCCGGUUCGCACAUCCUUUGUG--------------CAUUUAUACUGCAAUUAAAUGCGGAAGCUGCAAACAGCAAAGGAAGCGAA ............((.((((((((.....))))--------------).......(((((......)))))..((((....))))....))).)).. ( -22.60) >DroAna_CAF1 118752 84 - 1 ------CCA------CUCCCACGUCCUUUGUUGUUGCUAUUUCAGGCAUUAAUGCUGCAAUUAAAUGGAGGGGCUGCAAACAAAGAAGGAAGCGCA ------...------........((((((.((((((((......))).....(((.((..((......))..)).)))))))).))))))...... ( -18.20) >consensus AGAUUUCCAUCCCGGUUCGCACAUCCUUUGUGUUUGCCAUUUCAGGCAUUUAUACUGCAAUUAAAUGCGGGAGCUGCAAACAGCGAAGGAAGCGAA ................((((...((((((((((((((..((((...((((((.........))))))..))))..))))))).))))))).)))). (-17.30 = -20.00 + 2.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:49 2006