Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,650,099 – 2,650,193 |
Length | 94 |
Max. P | 0.808564 |
Location | 2,650,099 – 2,650,193 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 77.63 |
Mean single sequence MFE | -24.12 |
Consensus MFE | -11.10 |
Energy contribution | -11.61 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.33 |
Mean z-score | -2.29 |
Structure conservation index | 0.46 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808564 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2650099 94 + 22407834 UUUUCGGGCAGCUGUUUGUUGGUUCCCCUGUAAACAGUGGGAUAAUGACAUUCCUUGCCCCUUUUUAAGCCAUAUUUUUGGUGUUCACUUUCCU----- .....((((((..(..(((((..(((((((....))).))))...)))))..).))))))........((((......))))............----- ( -27.30) >DroSec_CAF1 70966 94 + 1 UUUUUGGGCAGCUGUUUGUUGGUUCCCUUGUAAACAGUGGGAUAAUGGCAUUCCUUCCCCCUUUUUAUACCAUAUUUUUGGUGUUCACUUUCCU----- .....(((..((((((((..((....))..))))))))(((((......)))))....))).....((((((......))))))..........----- ( -21.10) >DroSim_CAF1 72009 94 + 1 UUUUCGGGCAGCUGUUUGUUGGUUCCCCUGUAAACAGUGGGAUAAUGGCAUUCCUUCCCCCUUUUUAUACAAUAUUUUUGGUGUUCACUUUCCU----- .....(((((((((((((..((....))..))))))))((((....((....)).))))......................)))))........----- ( -20.20) >DroEre_CAF1 79362 94 + 1 UUUUCCGGCAACUGAUUGUUGGUUCCCCUGUAAACAGUGGGAUAAUGGCAUUCCUUCCCCUUUUUAAAGCCAUAUCUUUGGGGAUCAGUGUCCU----- ....(((((((....))))))).(((((((....))).))))....((((((...(((((...................)))))..))))))..----- ( -28.21) >DroYak_CAF1 74384 94 + 1 UUUUCGGGCAGCUGAUUGUUGGUUCCCCUGUAAACAGUGGGAUAAUGGCACUCCUUGCCCCUUUUCAAGCCAUAUUUUUGGGCUUCACCAUCCC----- .....((((((..((.(((((..(((((((....))).))))...))))).)).))))))......(((((.........))))).........----- ( -28.00) >DroAna_CAF1 113794 95 + 1 -UUUCCCGAU-CCUUUUUCCAGUU--CCUAUAAACGGUGGGAUACCUGGAUUCUCUUGCCUUUUUACAAAAAUACUGAUGGGAUCCAUUUUCGUCGUGU -.........-......(((((.(--(((((.....))))))...))))).....................((((.((((..(.....)..)))))))) ( -19.90) >consensus UUUUCGGGCAGCUGUUUGUUGGUUCCCCUGUAAACAGUGGGAUAAUGGCAUUCCUUCCCCCUUUUUAAACCAUAUUUUUGGGGUUCACUUUCCU_____ .....(((........(((((..(((((((....))).))))...)))))........)))...................................... (-11.10 = -11.61 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:47 2006