Locus 920

Sequence ID 2L_DroMel_CAF1
Location 2,645,459 – 2,645,567
Length 108
Max. P 0.849702
window1480

overview

Window 0

Location 2,645,459 – 2,645,567
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.04
Mean single sequence MFE -30.98
Consensus MFE -20.13
Energy contribution -20.93
Covariance contribution 0.81
Combinations/Pair 1.08
Mean z-score -2.26
Structure conservation index 0.65
SVM decision value 0.78
SVM RNA-class probability 0.849702
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2645459 108 - 22407834
CAAGGCCAAGUGGCGUGUCAAUCGGCCAUUAACAUGGGUCAGGGAGCUCUCCCUGUGCCGCCGAUAAAUAAAAACAAACACCUAGAUGGAGCACCACCACC------------CAUACAC
...((....((((.((((..(((((((((....)))(((((((((....)))))).)))))))))...............((.....)).))))..)))))------------)...... ( -33.30)
>DroSec_CAF1 66165 120 - 1
CAAGGCCAAGUGGCGUGUCAAUCGGCCAUUAACAUGGGUCAGGGAGCUCUCCCUGUGCCGCCGAUAAAUAAAAACAAACACCUAGAUGUAACACCACCACCCACACCCACACCCAUACAC
...((....((((.((((..(((((((((....)))(((((((((....)))))).)))))))))............(((......))).............))))))))..))...... ( -33.50)
>DroSim_CAF1 67263 120 - 1
CAAGGCCAAGUGGCGUGUCAAUCGGCCAUUAACAUGGGUCAGGGAGCUCUCCCUGUGCCGCCGAUAAAUAAAAACAAACACCUAGAUGGAGCACCACCACCCACACCCACACCCAAACAC
...((....((((.((((..(((((((((....)))(((((((((....)))))).)))))))))...................(.(((....))).)....))))))))..))...... ( -35.70)
>DroEre_CAF1 74466 117 - 1
CAAGGCCAAGUGGCGUGUCAAUCGGCCAUUAACAUGGGUCAGGGCGCUCUCCCUAUGCCGCCGAUAAAUAAAAACAAACACCUAGAUGGAGCACCACCACC---ACCGCCACCCACACCC
...(((...((((.((((..(((((((((....)))(((.((((......))))..)))))))))...............((.....)).))))..)))).---...))).......... ( -31.20)
>DroYak_CAF1 68810 97 - 1
CAAGGCCAAGUGGCGUGUCAAUCGGCCAUUAACAUGGGUCGGGGCGCACUCCCUGUGCCGCCGAUAAAUAAAAACAAACACCUAGAUGGAGCAGCAC-----------------------
.....(((..(((.((((.......((((....))))(((((((((((.....)))))).)))))............)))))))..)))........----------------------- ( -28.40)
>DroAna_CAF1 97995 99 - 1
CAAGGCCAAGUGCCGUGUCAAUCGGCCAUUAACAUGGGUCGGGAACACCUCUCUCUGCGUCCGAUAAAUAAAAACAAACACCUACAUACAUA---------------------GAUGGCC
...(((((.(((((((((.(((.....))).))))))((((((..((........))..)))))).............)))(((......))---------------------).))))) ( -23.80)
>consensus
CAAGGCCAAGUGGCGUGUCAAUCGGCCAUUAACAUGGGUCAGGGAGCUCUCCCUGUGCCGCCGAUAAAUAAAAACAAACACCUAGAUGGAGCACCACCACC____________CAUACAC
..(((.....((...(((..(((((((((....)))(((((((((....)))))).)))))))))..)))....))....)))..................................... (-20.13 = -20.93 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:43 2006