Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 308,319 – 308,426 |
Length | 107 |
Max. P | 0.659545 |
Location | 308,319 – 308,426 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.10 |
Mean single sequence MFE | -18.96 |
Consensus MFE | -13.52 |
Energy contribution | -14.32 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.71 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659545 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 308319 107 + 22407834 UUUGUAAACAAACAGACUGGCAGAUAAAACACCUGUAAAUCCCCACUUCAAAGCAG-------------CACCACCACCCACAACAACAAUGCCAGCAGCACCACCCACUCACAGUGGGC (((((......)))))(((((((......)..((((................))))-------------.....................))))))........(((((.....))))). ( -17.59) >DroSec_CAF1 12638 107 + 1 UUUGUAAACAAACAGACUGGCAGAUAAAACACCUGUAAAUCCCCACUUCAAAGGAG-------------CACCACCACCCACAACAACAAUGCCAGCAGCACCACCCACUCACAGUGGGC (((((......)))))(((((((((...((....))..)))...........((..-------------..)).................))))))........(((((.....))))). ( -19.00) >DroSim_CAF1 14375 107 + 1 UUUGUAAACAAACAGACUGGCAGAUAAAACACCUGUAAAUCCCCACUUCAAAGGAG-------------CACCACCACCCACAACAACAAUGCCAGCAGCACCACCCACUCACAGUGGGC (((((......)))))(((((((((...((....))..)))...........((..-------------..)).................))))))........(((((.....))))). ( -19.00) >DroEre_CAF1 13182 120 + 1 UUUGUAAACAAACAGACUGGCAGAUAAAACACCUGUAAAUCCCCACUUCAAAGGUGAACCCACUCCCUCCACCACCACCCACAGCAACAAUGGCAGCAACACCACCCACGCACAGUGGGC (((((......)))))...((((.........)))).....((((((.....((((.............))))..........((.....(((........))).....))..)))))). ( -19.92) >DroYak_CAF1 13476 117 + 1 UUUGUAAACAAACAGACUGGCAGAUAAAACACCUGUAAAUCCCCACUUCAAAGGUGAAUCCAC---CACCACCACCACCCACAACAACAAUGGCAGCCACACCACCCCCGCACAGUGGGC (((((......)))))...((((.........)))).....((((((.....((((....)))---).......................(((........))).........)))))). ( -19.30) >consensus UUUGUAAACAAACAGACUGGCAGAUAAAACACCUGUAAAUCCCCACUUCAAAGGAG_____________CACCACCACCCACAACAACAAUGCCAGCAGCACCACCCACUCACAGUGGGC (((((......)))))(((((((((...((....))..))).((........))....................................))))))........(((((.....))))). (-13.52 = -14.32 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:31 2006