Locus 919

Sequence ID 2L_DroMel_CAF1
Location 2,644,784 – 2,644,879
Length 95
Max. P 0.858205
window1479

overview

Window 9

Location 2,644,784 – 2,644,879
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 77.82
Mean single sequence MFE -29.05
Consensus MFE -9.76
Energy contribution -10.32
Covariance contribution 0.56
Combinations/Pair 1.30
Mean z-score -2.93
Structure conservation index 0.34
SVM decision value 0.82
SVM RNA-class probability 0.858205
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2644784 95 + 22407834
AGCUUUGAUGCGGAUGCAGUCGAAGCGAGUGUAGUCCACA-GGGAAAUGCAUACGAAAAUCAAUUCAAUUUGCAGUUGGCAAGCGCAA-AGCGAAUG
.((((((((((....))).)))))))(.(((((.(((...-.)))..))))).)........((((..(((((.(((....)))))))-)..)))). ( -26.50)
>DroSec_CAF1 65501 94 + 1
AGCUUUGAUGCGGAUGCAGUCGAGGCGACUGCAGUCCGCC-G-GAAAUGCAAACGAAAAUCAAUUCAAUUUGUAGUUGGCAAGCGCAA-AGCGAAUG
.((((((.((((((((((((((...)))))))).)))(((-(-(...((((((.(((......)))..)))))).)))))..))))))-)))..... ( -39.30)
>DroSim_CAF1 66594 95 + 1
AGCUUUGAUGCGGAUGCAGUCGAGGCGACUGCAGUCCGCC-GGGAAAUGCAAACGAAAAUCAAUUCAAUUUGCAGUUGGCAAGCGCAA-AGCGAAUG
.((((((.((((((((((((((...)))))))).)))(((-((....((((((.(((......)))..)))))).)))))..))))))-)))..... ( -39.60)
>DroEre_CAF1 73794 81 + 1
AGCUUUGAUGC---------------GACUGCAGUCCACCAGGGGAAUGCAAACGAAAAUCAAUUCAAUUUGCAGUUGGCAAGCGCAU-AGUGAAUG
.....((((.(---------------(..((((.(((......))).))))..))...))))(((((...(((.(((....)))))).-..))))). ( -21.30)
>DroYak_CAF1 68122 80 + 1
AGCUUUGAUGC---------------GACUGCAGUCCAUC-GGAAAAAGCAAACGAAAAUCAAUUCAAUUUGCAGUUGCCAAGCGCAA-AGCGAAUG
.((((((..((---------------(((((((((((...-)))..........(((......)))...))))))))))......)))-)))..... ( -23.10)
>DroAna_CAF1 97385 93 + 1
AGCUUUGAUGUGGAUGCACUCGAGUCAUCUUGAGUCCCCA-GGGGAAUGCAAACGAAAAUUGA---AUUUUACCAAAGGCGAGAGCAAGAGCGAAUU
.((((((((.((..((((((((((....))))))((((..-.)))).))))..))...)))..---............((....)).)))))..... ( -24.50)
>consensus
AGCUUUGAUGCGGAUGCAGUCGAGGCGACUGCAGUCCACC_GGGAAAUGCAAACGAAAAUCAAUUCAAUUUGCAGUUGGCAAGCGCAA_AGCGAAUG
.((((((.(((..................((((.(((....)))...))))..................((((.....)))))))))).)))..... ( -9.76 = -10.32 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:42 2006