Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,636,890 – 2,636,993 |
Length | 103 |
Max. P | 0.652840 |
Location | 2,636,890 – 2,636,993 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 73.72 |
Mean single sequence MFE | -16.79 |
Consensus MFE | -2.48 |
Energy contribution | -2.28 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.62 |
Mean z-score | -1.55 |
Structure conservation index | 0.15 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652840 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2636890 103 - 22407834 GAUAGAGAUGACAAAAAUUCUGGAUGUCCGACUUCACUUUUGUGGCAUUCAAAGCUUUCAAACCCUUUUUAAUAAU-AUAAUACAAAGCUAUGUUUUUCUACCC ..((((((.((((.......(((((((((((........))).)))))))).((((((..................-.......)))))).))))))))))... ( -18.21) >DroSec_CAF1 57561 81 - 1 GAUAGAGAUGACAAAAAUUCUGAAUGUCCGAAUUCAAUUAUGUGGUAUUCAAACCUUUCAAACCCUUUGU-----------------------UUUUCCUACCC ..(((..(.((((((.....(((((......)))))....((.(((......)))...)).....)))))-----------------------).)..)))... ( -11.10) >DroSim_CAF1 58640 81 - 1 GAUAGAGAUGACAAAAAUUCUGAGUGUCCAAAUUCACUUAUGUGGUAUUCAAACCAUUCAAACCCUUUGU-----------------------UUUUUCUACCC ..((((((.((((((.....((((((........)))))).(((((......)))))........)))))-----------------------).))))))... ( -18.20) >DroEre_CAF1 65917 103 - 1 GAUAGAGAUGACAAACAUGCAGGAUUUUCAACUUCACUUGUGUGGUAUUCGAACCUUUCAAACCCUUUUUAACAAA-CGAAUACAAAUUAAUGUUUUUCUACCC ..((((((.((((..((((((((.............))))))))(((((((.........................-))))))).......))))))))))... ( -18.63) >DroYak_CAF1 59969 104 - 1 GAUAGAGAUGACAAAAAUAUAGGAUUUCCCACUUCACUUUUGCGGUAUUCCAACCUUUCAAACCCUUUUUAACAAAAGGGAUGCAAAUUAAUGUUCUGCAACCC (.(((((..............((.....))........((((((((......))).......(((((((....)))))))..)))))......))))))..... ( -17.80) >consensus GAUAGAGAUGACAAAAAUUCUGGAUGUCCAACUUCACUUAUGUGGUAUUCAAACCUUUCAAACCCUUUUUAA_AA_____AU_CAAA___AUGUUUUUCUACCC .....................(((((.(((............))))))))...................................................... ( -2.48 = -2.28 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:35 2006