Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,636,138 – 2,636,228 |
Length | 90 |
Max. P | 0.947757 |
Location | 2,636,138 – 2,636,228 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.10 |
Mean single sequence MFE | -25.52 |
Consensus MFE | -19.52 |
Energy contribution | -19.33 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.17 |
Mean z-score | -1.57 |
Structure conservation index | 0.77 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.947757 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2636138 90 + 22407834 ------C------------------------CAACUCGGAAUCCUGACAAUUGAAGUGGCAUUUCGCACUCCGGCGUCAUCUGUCUGCCAAGUGCCUUUUGGAGUUCGCUCACGUCACAA ------.------------------------(((.((((....))))...)))..(((((.....(((((..((((.(....).).))).)))))......(((....)))..))))).. ( -23.10) >DroPse_CAF1 78830 115 + 1 GUGCUCCUCCUCCUCCUCUGACUCU-----CCAUCUCAAACUCUUCACAAUUCAAGUGGCACUUCACACUCGGGCGUCAUCUGUCUGCCAAGUGCCCCUUGGAGUUUGCUCACGUCACAA ..................((((...-----......................((((.(((((((..((..((((.....))))..))..))))))).))))(((....)))..))))... ( -25.40) >DroEre_CAF1 65186 90 + 1 ------C------------------------CAACUCGGAAUCCUGACAAUUGAAGUGGCAUUUCGCACUCCGGCGUCAUCUGUCUGCCAAGUGCCUUUUGGAGUUCGCUCACGUCACAA ------.------------------------(((.((((....))))...)))..(((((.....(((((..((((.(....).).))).)))))......(((....)))..))))).. ( -23.10) >DroYak_CAF1 59191 111 + 1 ------CCC---AACUUCCAACUCCCAACUUCAGCUCGCAAUCCUGACAAUUGAAGUGGCAUUUCGCACUCCGGCGUCAUCUGUCUGCCAAGUGCCUUUUGGAGUUCGCUCACGUCACAA ------...---.......((((((..(((((((....((....))....)))))))(((((((.(((....((((.....))))))).)))))))....)))))).............. ( -26.20) >DroAna_CAF1 78556 90 + 1 ------C------------------------AGACUCCGACUCCUGACAAUUCGAGUGGCAUUUCGCACUCCGGCAUCAUCUGUCUGCCAAGUGCCUUUCGGAGUUUGCUCACGUCACAA ------(------------------------((((((((((((..........))))(((((((.(((....((((.....))))))).)))))))...)))))))))............ ( -29.10) >DroPer_CAF1 75701 112 + 1 GUGCUCCUC---CUCUGCUGACUCU-----CCAUCUCAAACUCUUCACAAUUCAAGUGGCACUUCACACUCGGGCGUCAUCUGUCUGCCAAGUGCCCCUUGGAGUUUGCUCACGUCACAA .........---...((.((((...-----......................((((.(((((((..((..((((.....))))..))..))))))).))))(((....)))..)))))). ( -26.20) >consensus ______C________________________CAACUCGGAAUCCUGACAAUUCAAGUGGCAUUUCGCACUCCGGCGUCAUCUGUCUGCCAAGUGCCUUUUGGAGUUCGCUCACGUCACAA ............................................((((.....(((.(((((((.(((....((((.....))))))).))))))).))).(((....)))..))))... (-19.52 = -19.33 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:34 2006