Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,633,214 – 2,633,304 |
Length | 90 |
Max. P | 0.589919 |
Location | 2,633,214 – 2,633,304 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 82.09 |
Mean single sequence MFE | -13.73 |
Consensus MFE | -8.16 |
Energy contribution | -8.38 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.15 |
Mean z-score | -2.09 |
Structure conservation index | 0.59 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589919 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2633214 90 + 22407834 AAAUAAAAGUUGAAAUUGUCGCGUAGAAAUU-CUAAGAAUAAAGCGGCGAAUUUUCCACAAAGCCAAAAAAAA---AAAAAAAUAGGGCGGAAG ........((.(((((((((((.(((.....-)))........)))))))..)))).))...(((........---..........)))..... ( -14.77) >DroSec_CAF1 53952 83 + 1 AAAUAAAAGUUGAAAUUGUCGCGUAGAAAUU-CUAAGAAUAAAGCGGCGAAUUUUCCACAAAGCCAAAA----------AAAUUAGGGCGGAAG ........((.(((((((((((.(((.....-)))........)))))))..)))).))...(((....----------.......)))..... ( -15.30) >DroSim_CAF1 54023 92 + 1 AAAUAAAAGUUGAAAUUGUCGCGUAGAAAUU-CUAAGAAUA-AGCGGCGAAUUUUCCACAAAGCCAAAAAAAAAAAAAAAAAAUAGGGCGGAAG ........((.(((((((((((.(((.....-)))......-.)))))))..)))).))...(((.....................)))..... ( -14.70) >DroEre_CAF1 62272 79 + 1 AAAUAAAAGUUGAAAUUGUCGCAUAGAAAUU-CUAAGAAUAAAGCGGCGAAUUUUCCACAAAGCCAA--------------AAUAGGGCGGAAG ........((.(((((((((((.........-...........)))))))..)))).))...(((..--------------.....)))..... ( -14.25) >DroYak_CAF1 56297 84 + 1 AAAUAAAAGUUGAAAUUGUCGCAUAGAAAUU-CUAAGAAUAAAGCGGCGAAUUUUCCACAAAUUUAAAAAAA---------AAAAGGGCGGAAG ...............(((((((.........-...........)))))))...((((.(...(((.......---------.)))..).)))). ( -10.75) >DroAna_CAF1 75285 75 + 1 AAAUAAAAGUUGAAAUUGUCGCGCACAUAUUCCUAAGAAUAAAACAAGGAAUUUUCCGCAAAACCCA-------------------GCCGGGAA ....................(((.....((((((............))))))....)))....(((.-------------------...))).. ( -12.60) >consensus AAAUAAAAGUUGAAAUUGUCGCGUAGAAAUU_CUAAGAAUAAAGCGGCGAAUUUUCCACAAAGCCAAAA____________AAUAGGGCGGAAG ........((.(((((((((((.....................)))))))..)))).))................................... ( -8.16 = -8.38 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:33 2006