Locus 912

Sequence ID 2L_DroMel_CAF1
Location 2,632,908 – 2,633,011
Length 103
Max. P 0.580239
window1469

overview

Window 9

Location 2,632,908 – 2,633,011
Length 103
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 79.11
Mean single sequence MFE -23.24
Consensus MFE -11.40
Energy contribution -12.68
Covariance contribution 1.28
Combinations/Pair 1.12
Mean z-score -2.08
Structure conservation index 0.49
SVM decision value 0.09
SVM RNA-class probability 0.580239
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2632908 103 + 22407834
UUGCGUUUCGGUCACGUUCCGAGGCC----------AACGGAAAAAUGGCUCCAUUUCCAUUUUCCGUGGCAUUUUCUCCAGCACAUUCCAUUC-CAGAAUAAACACAUGCAUA
.((((((((((.......)))))(((----------(.(((((((.(((........)))))))))))))).......................-............))))).. ( -26.00)
>DroSim_CAF1 53718 103 + 1
UUGCGUUUCGGUCACGUUCCGAGGCC----------AACGGAAAAAUGGCUCCAUUUCCAUUUUCCGUGGCAUUUUCUCCAGCACAUUCCAUUC-CAGAAUAAACACAUGCAUA
.((((((((((.......)))))(((----------(.(((((((.(((........)))))))))))))).......................-............))))).. ( -26.00)
>DroEre_CAF1 61979 97 + 1
UUGCGUUUCGGUCACGUUCCGAGGCC----------AACGGAAAAAUGGCUCCA------UUUUCCGUGGCAUUUUCUCCAGCACUUGCCAUUC-CAGAAUAAACACAUGCAUA
.((((((((((.......))))))).----------.((((((((.((....))------))))))))((((..............))))....-..............))).. ( -25.84)
>DroYak_CAF1 55989 103 + 1
UUGCGUUUCGGUCACGUUCCGAGGCC----------AACGGAAAAAUGGCUCCAUUUCCAUUUUCCGUGGCAUUUUCUCCA-UACUUUCCAUUCGCUGUAUAAGCACAUGCAUA
.((((((((((.......)))))(((----------(.(((((((.(((........))))))))))))))..........-............(((.....)))..))))).. ( -28.90)
>DroAna_CAF1 74952 86 + 1
UUGCGUUUCGGUCACGUUCUGACUCG----------AACGGAAAAAUGGCUCCAUUUCCAUU------------UUCUCUAGCACA-----UUC-CUGAAUAAACACAUGCAUA
.(((((((.(((((.....))))).)----------)))(..(((((((........)))))------------))..)..)))..-----...-................... ( -17.80)
>DroPer_CAF1 70315 96 + 1
UUGCGUUUCAGUCACGUUCCGAACCGAACCGAACAGAACGGAAAAAUGGCUCCAUUUCCCUU-------CCAUUUCCUA----------CAUUC-CAAAAUAAACACAUGCAUA
.(((((((...((..((((......)))).))...))))(((((((((....)))))...))-------))........----------.....-..............))).. ( -14.90)
>consensus
UUGCGUUUCGGUCACGUUCCGAGGCC__________AACGGAAAAAUGGCUCCAUUUCCAUUUUCCGUGGCAUUUUCUCCAGCACAUUCCAUUC_CAGAAUAAACACAUGCAUA
.((((((((((.......)))))))..............((((..(((....)))))))..................................................))).. (-11.40 = -12.68 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:32 2006