Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,613,663 – 2,613,758 |
Length | 95 |
Max. P | 0.997691 |
Location | 2,613,663 – 2,613,758 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 69.59 |
Mean single sequence MFE | -20.15 |
Consensus MFE | -11.39 |
Energy contribution | -12.77 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.05 |
Mean z-score | -2.37 |
Structure conservation index | 0.57 |
SVM decision value | 2.91 |
SVM RNA-class probability | 0.997691 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2613663 95 - 22407834 AAAAUCAAACAGCUU-----------------------AAA-AAAUGCAGUACAGAAUAUUGGAUGGCUCAUACAGAUCUGUCACAAUGAAAUACCGCCAGUUUAAUUCGCAGCAUUUU ...............-----------------------..(-((((((.((...(((((((((.(((.(((((((....)))....))))....))))))))...)))))).))))))) ( -14.70) >DroSec_CAF1 34404 79 - 1 AAAAUCAAACAGCUU-----------------------AAAAAAAUGCAGUACCGAAUAUUGGAUGGCUCACACAGAU-----------------CGCCAUUUUUAUUCGCUGCACUUU ...............-----------------------.......(((((...((((((..(((((((((.....)).-----------------.))))))).))))))))))).... ( -18.90) >DroSim_CAF1 34498 79 - 1 AAAAUCAAACAGCUU-----------------------AAAAAAAUGCAGUACCGAAUAUUGGAUGGCUCACACGGAU-----------------CGCCAUUUUUAUUCGCUGCAUUUU ...............-----------------------...(((((((((...((((((..(((((((((.....)).-----------------.))))))).))))))))))))))) ( -22.10) >DroYak_CAF1 36033 119 - 1 GAAAUCAAACAGUUGCGUGCAUGUCCUUUUUAUGCGCAAAAAAAAUGCAGUACAAAAUAUUGGAUGCUUCACACAGAGCUGUUACUAUGAAAUAUCACCAUUUUAAUUCGCAGCAUUUU ...........((((((((((((.......)))))))....(((((((((((.....)))))((((.((((.(((....))).....)))).))))..)))))).....)))))..... ( -24.90) >consensus AAAAUCAAACAGCUU_______________________AAAAAAAUGCAGUACAGAAUAUUGGAUGGCUCACACAGAU_________________CGCCAUUUUAAUUCGCAGCAUUUU .........................................((((((((((...((((...(((((((............................)))))))..)))))))))))))) (-11.39 = -12.77 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:29 2006