Locus 908

Sequence ID 2L_DroMel_CAF1
Location 2,612,473 – 2,612,587
Length 114
Max. P 0.568659
window1462

overview

Window 2

Location 2,612,473 – 2,612,587
Length 114
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 93.53
Mean single sequence MFE -27.03
Consensus MFE -21.43
Energy contribution -22.43
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.30
Structure conservation index 0.79
SVM decision value 0.07
SVM RNA-class probability 0.568659
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2612473 114 + 22407834
UUCCGUAAAAAUAAAACCAGAACAGGCAAUAUUUUUUAUGGGCAAGCCGGAAAGUGUUGGACAUGAAUACGAAUCAUGUUUUACACCGAUUUGUUGAAUUGAAAAAAAUCGCCA
.((((((((((.....((......))......))))))))))......((...((((..(((((((.......)))))))..))))((((((.((.......)).)))))))). ( -26.30)
>DroSec_CAF1 33198 110 + 1
UUCCGUAAAAAUAAAACCAGAACAGGUAAUAUU-UUUAUGGGCAAGCCGGAAAGUGUUGGACAUGAAUACGGAUCAUGUUGUACACCGAUUUGUUGA-UUGAA--AAAUCGCCA
..(((((((((((..(((......)))..))))-)))))))((((..(((....(((..(((((((.......)))))))..))))))..)))).((-((...--.)))).... ( -31.30)
>DroSim_CAF1 33280 112 + 1
UACCGCAAAAAUAAAACCAAAACAGUCAAUAUUUUUUAUGGGCAAGCCGGAAAGUGUUGGACAUGAAUACGGAUCAUGUUUUACACCGAUUUGUUGA-UUGAA-AAAAUCGCCA
......................(((((((((..((.....((....)).....((((..(((((((.......)))))))..)))).))..))))))-)))..-.......... ( -23.50)
>consensus
UUCCGUAAAAAUAAAACCAGAACAGGCAAUAUUUUUUAUGGGCAAGCCGGAAAGUGUUGGACAUGAAUACGGAUCAUGUUUUACACCGAUUUGUUGA_UUGAA_AAAAUCGCCA
..(((((((((.....((......))......))))))))).......((...((((..(((((((.......)))))))..))))((((((.((.....))...)))))))). (-21.43 = -22.43 +   1.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:26 2006