Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,604,539 – 2,604,639 |
Length | 100 |
Max. P | 0.770220 |
Location | 2,604,539 – 2,604,639 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 89.21 |
Mean single sequence MFE | -28.23 |
Consensus MFE | -22.26 |
Energy contribution | -22.77 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.79 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2604539 100 + 22407834 UUC-------UCCCUGCCGAGCGGUAAUUUACCGAAAGGACCGAACGGCCGAAAUUCAAUUUAUGCGAGCGAACAAAUCCUCGAGCUGGCAGAAGCACUCGUACAAA ...-------...(.((((..((((......((....))))))..)))).)............(((((((((........))).(((......))).)))))).... ( -27.30) >DroSec_CAF1 25341 100 + 1 UUC-------UGCCUGCCGAGCGGUAAUUUACCGAAAGGACCAAACGGCCGAAACUCAAUUUAUGCGAGCGAACAAAUCCUCGAGCUGGCAGAAGUACUCGUACAAA (((-------((((.((.(((((((..(((.((....))...)))..))))...)))........((((.((.....)))))).)).)))))))(((....)))... ( -31.30) >DroSim_CAF1 25413 100 + 1 UUC-------UCCCUGCCGAGCGGUAAUUUACCGAAAGGACCAAACGGCCGAAACUCAAUUUAUGCGAGCGAACAAAUCCUCGAGCUGGCAGAAGUACUCGUACAAA ...-------...(((((.((((((..(((.((....))...)))..)))...............((((.((.....)))))).))))))))..(((....)))... ( -27.10) >DroEre_CAF1 33370 98 + 1 UUCACAGGACUCUCUGGCGAGCGGUAAUUUACCGAAAGGACC---CGGCCGAAACUCAAUUUAUGCGAGCGAACAAAUCCUCGAGCUGGCAUAAG------UACAAA ....((((....))))..(((((((......((....))...---..))))...))).((((((((.(((..............))).)))))))------)..... ( -27.24) >consensus UUC_______UCCCUGCCGAGCGGUAAUUUACCGAAAGGACCAAACGGCCGAAACUCAAUUUAUGCGAGCGAACAAAUCCUCGAGCUGGCAGAAGUACUCGUACAAA .............(((((.((((((......((....))........)))...............((((.((.....)))))).))))))))............... (-22.26 = -22.77 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:25 2006