Locus 904

Sequence ID 2L_DroMel_CAF1
Location 2,586,296 – 2,586,403
Length 107
Max. P 0.922468
window1457

overview

Window 7

Location 2,586,296 – 2,586,403
Length 107
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 85.37
Mean single sequence MFE -34.32
Consensus MFE -26.20
Energy contribution -26.56
Covariance contribution 0.36
Combinations/Pair 1.20
Mean z-score -2.19
Structure conservation index 0.76
SVM decision value 1.15
SVM RNA-class probability 0.922468
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2586296 107 - 22407834
AUGCAUACGUGAGUGGG-GGCUUCUAUGCACAUGGAUGUG---------GUACAUACAUAUGUACGUCCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUGCUU
..((((.....((((((-(((.......((((....))))---------((((((....)))))))))).....((((((((....))))))))))))).((((...)))))))).. ( -37.10)
>DroSec_CAF1 6998 108 - 1
AUGCAAACGUGAGUGGGGGGUGUCUGUGCACAUGGAUGUG---------GUGCAUACAUAUGUACGUCCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUGCUU
..(((......(((((...((((....)))).(((((...---------((((((....)))))))))))....((((((((....))))))))))))).((((...)))).))).. ( -34.50)
>DroSim_CAF1 7019 107 - 1
AUGCAAACGUGAGUGGG-GGCGUCUGUGCACAUGGAUGUG---------GUGCAUACAUAUGUACGUCCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUGCUU
..(((......((((((-(((((((((....))))))...---------((((((....)))))))))).....((((((((....))))))))))))).((((...)))).))).. ( -37.10)
>DroEre_CAF1 12007 110 - 1
AUGCAAACGUGAGUGGG-GGCGUCCGUACACAUAGCUACACAUAUA------UAAGCAUACAUACGUCCAAUAUUCUGGUCCAUUUGGGCCGGGCCACUAUCGAAAUUUGAAUGCUU
..(((......((((((-(((((..(((......(((.........------..))).)))..)))))).....((((((((....))))))))))))).((((...)))).))).. ( -30.40)
>DroYak_CAF1 7128 116 - 1
AUGCAAACGUGAGUGGG-GGCAUCUCUACACAUGGAUAUACAUCUAUAUAUGUAUAUAUACAUACGUUCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUGCUU
..(((((((((.(((((-(....))))))...((.((((((((......))))))))...))))))))......((((((((....))))))))..................))).. ( -32.50)
>consensus
AUGCAAACGUGAGUGGG_GGCGUCUGUGCACAUGGAUGUG_________GUGCAUACAUAUGUACGUCCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUGCUU
..(((......(((((..((....((((((.(((.((((............)))).))).)))))).)).....((((((((....))))))))))))).((((...)))).))).. (-26.20 = -26.56 +   0.36) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:21 2006