Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,586,296 – 2,586,403 |
Length | 107 |
Max. P | 0.922468 |
Location | 2,586,296 – 2,586,403 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 85.37 |
Mean single sequence MFE | -34.32 |
Consensus MFE | -26.20 |
Energy contribution | -26.56 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.20 |
Mean z-score | -2.19 |
Structure conservation index | 0.76 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2586296 107 - 22407834 AUGCAUACGUGAGUGGG-GGCUUCUAUGCACAUGGAUGUG---------GUACAUACAUAUGUACGUCCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUGCUU ..((((.....((((((-(((.......((((....))))---------((((((....)))))))))).....((((((((....))))))))))))).((((...)))))))).. ( -37.10) >DroSec_CAF1 6998 108 - 1 AUGCAAACGUGAGUGGGGGGUGUCUGUGCACAUGGAUGUG---------GUGCAUACAUAUGUACGUCCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUGCUU ..(((......(((((...((((....)))).(((((...---------((((((....)))))))))))....((((((((....))))))))))))).((((...)))).))).. ( -34.50) >DroSim_CAF1 7019 107 - 1 AUGCAAACGUGAGUGGG-GGCGUCUGUGCACAUGGAUGUG---------GUGCAUACAUAUGUACGUCCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUGCUU ..(((......((((((-(((((((((....))))))...---------((((((....)))))))))).....((((((((....))))))))))))).((((...)))).))).. ( -37.10) >DroEre_CAF1 12007 110 - 1 AUGCAAACGUGAGUGGG-GGCGUCCGUACACAUAGCUACACAUAUA------UAAGCAUACAUACGUCCAAUAUUCUGGUCCAUUUGGGCCGGGCCACUAUCGAAAUUUGAAUGCUU ..(((......((((((-(((((..(((......(((.........------..))).)))..)))))).....((((((((....))))))))))))).((((...)))).))).. ( -30.40) >DroYak_CAF1 7128 116 - 1 AUGCAAACGUGAGUGGG-GGCAUCUCUACACAUGGAUAUACAUCUAUAUAUGUAUAUAUACAUACGUUCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUGCUU ..(((((((((.(((((-(....))))))...((.((((((((......))))))))...))))))))......((((((((....))))))))..................))).. ( -32.50) >consensus AUGCAAACGUGAGUGGG_GGCGUCUGUGCACAUGGAUGUG_________GUGCAUACAUAUGUACGUCCAAUAUUCUGGUCCAUUUGGGCCAGGCCACUAUCGAAAUUUGAAUGCUU ..(((......(((((..((....((((((.(((.((((............)))).))).)))))).)).....((((((((....))))))))))))).((((...)))).))).. (-26.20 = -26.56 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:21 2006