Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,584,463 – 2,584,562 |
Length | 99 |
Max. P | 0.865317 |
Location | 2,584,463 – 2,584,562 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 81.70 |
Mean single sequence MFE | -29.43 |
Consensus MFE | -18.92 |
Energy contribution | -20.32 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.21 |
Mean z-score | -2.63 |
Structure conservation index | 0.64 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2584463 99 - 22407834 CAAUCACAGAAUGGCUC-CCAUUGCCAGAUAAGAAUAGUUAAUCUGCGGUUUUCCAAGUGUUUCCUCGCUGCAAACGCUUGGGAGCCACCUUAUCAGGUC ..(((......((((..-.....))))((((((....((......))(((((.((((((((((.(.....).)))))))))))))))..)))))).))). ( -30.90) >DroSec_CAF1 5131 100 - 1 CAAUCACAGAAUGGCUCCCCAUUGCCAGAUAAGAAUAGUUAAUCUGCGGUUUUCCAAGUGUUUCCUUGCUGCAAACGCUUGGAAGCUUCCUUAUCAGGUC ..(((......((((........))))((((((....((......))(((((.((((((((((.(.....).)))))))))))))))..)))))).))). ( -28.40) >DroSim_CAF1 5152 99 - 1 CAAUCACAGAAUGGCUC-CCAUUGCCAGAUAAGAAUAGUUAAUCUGCGGUUUUCCAAGUGUUUCCUUGCUGCAAACGCUUGGAAGCUUCCUUAUCAGGUC ..(((......((((..-.....))))((((((....((......))(((((.((((((((((.(.....).)))))))))))))))..)))))).))). ( -28.10) >DroEre_CAF1 9892 95 - 1 CAG----AGAAUUGCUU-CCAUUGACAGAUAACAAUAGUUAAUCUGGGGGUUUCCAAGUGUUUCCUUGCUGCAAACGCUUGGGAGCUCCCUUAUCAGGUC ...----..........-.....((((((((((....))).))))((((((((((((((((((.(.....).)))))))))))))))))).......))) ( -33.20) >DroYak_CAF1 5263 99 - 1 CAAUCUCGAAAUGGCUC-CCAUUGCCAGAUAACAAUAGUUAAUCUGCGGGUUCCCAAGUGUUUCCUUGCUGCAAACGCUUGGGAGCUGCCUUAUCAGGUC ..((((.((...(((..-....(((.(((((((....))).)))))))(((((((((((((((.(.....).))))))))))))))))))...)))))). ( -35.70) >DroAna_CAF1 6753 94 - 1 UGA----AGAACCCCG--CCCGUACCAGAUAACCACAGCUAAUCUGCUGACUUAAAAGUAUUUCCUAGUUGCACAUGCUUAAGAAGUUCUUUAUCUGGGC ...----.........--......((((((((...((((......))))((((..((((((...(.....)...))))))...))))...)))))))).. ( -20.30) >consensus CAAUCACAGAAUGGCUC_CCAUUGCCAGAUAACAAUAGUUAAUCUGCGGUUUUCCAAGUGUUUCCUUGCUGCAAACGCUUGGGAGCUUCCUUAUCAGGUC ...........((((........))))(((((...(((.....))).((((((((((((((((.(.....).)))))))))))))..))))))))..... (-18.92 = -20.32 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:20 2006