| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,579,363 – 2,579,458 |
| Length | 95 |
| Max. P | 0.525353 |
| Location | 2,579,363 – 2,579,458 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 84.70 |
| Mean single sequence MFE | -23.85 |
| Consensus MFE | -17.77 |
| Energy contribution | -18.22 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525353 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2579363 95 - 22407834 GUAAGCCCCCUAAUU--CAA-UCCUGCUCUUGCAGAGGCCUACUACCCCUACUCCACAACACCCAACAAAGUGGAGGCCUGGGAACCCAAGGCGAAGA (((.(((........--...-..((((....)))).))).)))........((((((.............))))))((((((....)).))))..... ( -26.46) >DroSec_CAF1 9 95 - 1 UUAAUCCCCCUAAUC--CAA-UCCUGCUCUUGCAGAGGCCUACUACCCCUACUCCACAACACCCAACAAAGUGGAGGCCUGGGAUCCCAAGGCGAAGA ...............--...-..((((....))))..((((.....(((..((((((.............))))))....)))......))))..... ( -24.32) >DroSim_CAF1 11 95 - 1 GCAAUCCCCCUAAUU--CAA-UCCUGAUCUUGCAGAGGCCUACUACCCCUACUCCACAACACCCAACAAAGUGGAGGCCUGGGAUCCCAAGGCGAAGA .............((--(..-..(((......)))..((((.....(((..((((((.............))))))....)))......))))))).. ( -21.72) >DroEre_CAF1 4681 96 - 1 GUAAGCCCACUUAUU--UAAUACCUCCUUUUGCAGAGGCCUACUACCCCUACUCCACAACACCCAACAAAGUGGAGGCCUGGGAUCCCAAGGCGAAGA (((((....))))).--.....((((........)))).............((((((.............))))))((((((....)).))))..... ( -22.92) >DroYak_CAF1 11 96 - 1 GUAAUCCCACUAAUG--UAAAUCCUCCUUUUGCAGAGGCCUACUACCCCUACUCCACAACACCCAACAAAGUGGAGGCCUGGGAUCCCAAGGCGAAGA (..(((((.....((--((((.......)))))).((((((.((((........................)))))))))))))))..).......... ( -23.96) >DroPer_CAF1 9 90 - 1 -------CUUUUGUUUGAAA-UGCGUCUCUUGCAGAGGCCUAUAUGCCCUACACCACCACUCCCCCCAAAGUGGAGGCCUGGGAUCCCUCAGCGAAGA -------.(((((((.((.(-((.(((((.....))))).)))....((((..((.(((((........))))).))..)))).....))))))))). ( -23.70) >consensus GUAAUCCCCCUAAUU__CAA_UCCUGCUCUUGCAGAGGCCUACUACCCCUACUCCACAACACCCAACAAAGUGGAGGCCUGGGAUCCCAAGGCGAAGA ..........................(((.....)))((((.....(((..((((((.............))))))....)))......))))..... (-17.77 = -18.22 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:19 2006