Locus 901

Sequence ID 2L_DroMel_CAF1
Location 2,578,268 – 2,578,383
Length 115
Max. P 0.570745
window1454

overview

Window 4

Location 2,578,268 – 2,578,383
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.56
Mean single sequence MFE -49.93
Consensus MFE -27.65
Energy contribution -30.27
Covariance contribution 2.62
Combinations/Pair 1.31
Mean z-score -1.47
Structure conservation index 0.55
SVM decision value 0.07
SVM RNA-class probability 0.570745
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2578268 115 - 22407834
UCCUCCAGGCGAGGCAGUGGCUCCACCCGCGGUUCGAUGUUCUUAAUGCCCCCGGAAGCGGUGGCUACCGCUACCAACUGGGCAUUGAUGACGCGUCGCUUGGGCGGAGAGC-----UUC
((((((((((((.((.((((......))))........(((.(((((((((..((.((((((....)))))).))....))))))))).))))).))))))))).)))....-----... ( -55.40)
>DroPse_CAF1 4605 120 - 1
UCCUCGACGGGUGGCAGCGGCUCCAUGGCGGUCUGCAUGUUCAGUAUACUGCCGCUUGCCGUGGUCAUGGCCAUCAGUUUGGCAUCAACAAUACGACGGCUGGCCUGUGGGAUCACCUUG
((((..(((((((((.(((((....(((((((.(((.......))).)))))))...))))).)))..((((.((...(((.......)))...)).)))).))))))))))........ ( -44.30)
>DroSec_CAF1 4853 115 - 1
UCCUCCGGGCGAGGCAGUGGCUCCACCCGCGGUUCCAUGUUUUUAAUGCCCCCGGAAUCGGUGGCUACAGCCACCAACUGAGCAUUGAUGACGCGUCGCUUGGGCGGAGAGC-----UUC
((((((((((((.((.((((..((......))..))))(((.(((((((...(((....((((((....))))))..))).))))))).))))).))))))))).)))....-----... ( -51.00)
>DroSim_CAF1 4858 115 - 1
UCCUCCGGGCGAGGCAGUGGCUCCACCCGCGUUUCGAUGUUCUUAAUGCCCCCGGAAUCGGUGGCUACAGCCACCAACUGGGCAUUGAUGACGCGUCGCUUGGGCGGAGAGC-----UUC
((((((((((((.((.((((......))))........(((.(((((((((..((....((((((....))))))..))))))))))).))))).))))))))).)))....-----... ( -53.60)
>DroYak_CAF1 5267 115 - 1
UCCUCCGGGCGAGGCAGUGGCUCCACCGUGGGUUCGAUGUUCUUAAUGCCCCCGGACGCGGUCGCAAUGGCCACCAACUGGGCAUUGAUGACGCGUCGUUUGGGCGGAGAGC-----UUC
.((..(((..(..((....))..).)))..))...((.((((((...((((...((((((.((((((((.(((.....))).))))).)))))))))....)))).))))))-----.)) ( -49.00)
>DroPer_CAF1 4695 120 - 1
UCCUCGACGGGAGGCAGCGGCUCCAUGGCGGUCUGCAUGUUCCGUAUACUGCCGCUUGCCGUGGUCAUGGCCAUCAGUUUGGCAUCAACAAUGCGACGGCUGGCCUGUGGGAUCACCUUG
((((....))))(((((((((......((((.(.....)..)))).....))))).))))((((((..(((((.(.(((..((((.....))))))).).))))).....)))))).... ( -46.30)
>consensus
UCCUCCAGGCGAGGCAGUGGCUCCACCCGCGGUUCCAUGUUCUUAAUGCCCCCGGAAGCGGUGGCUACGGCCACCAACUGGGCAUUGAUGACGCGUCGCUUGGGCGGAGAGC_____UUC
((((((((((((.((.(((....)))............(((.(((((((((..(....)((((((....))))))....))))))))).))))).))))))))).)))............ (-27.65 = -30.27 +   2.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:18 2006