Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,576,279 – 2,576,399 |
Length | 120 |
Max. P | 0.540362 |
Location | 2,576,279 – 2,576,399 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.22 |
Mean single sequence MFE | -41.47 |
Consensus MFE | -24.30 |
Energy contribution | -24.94 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.29 |
Mean z-score | -1.83 |
Structure conservation index | 0.59 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2576279 120 - 22407834 GGUCCGCUACUUGGAGGCCAAACUGCAGCAGCACAAGGAUCUGCUAUCCCAGAUUCAUGCCACCUCCGCCAGGAUGCAACAGGCAUCCUCCCUGCUGGCAGAAAGUAGACCACCCACGCC ((((..((....(((((......(((....)))...(((((((......)))))))......)))))((((((((((.....)))))).......))))....))..))))......... ( -41.61) >DroPse_CAF1 2643 117 - 1 GGUGCGCUACCUGGAGAACAAGCUGAAGGAGCACACGGAUCUGCUCUCCCAGAUCCAUGCCACCUCGGCGCGCAUGCAACAGUCGU---UGGGAGUGGCGGAUGCUGCGUCCCCAACGCC .((((((....((.....)).(((((.(..(((...(((((((......))))))).)))..).)))))))))))......(.(((---((((.(..((....))..)...)))))))). ( -47.60) >DroSec_CAF1 2697 120 - 1 GGUCCGCUUCUUGGAGGCCAAACUGCAGCAGCACAAGGAUCUGCUGUCCCAGAUUCAUGCCACAUCCGCCAGGAUGCAACAGGCAUCCUCCCUGCUGGUAGAAAGUAGGCCACCCACGCC ((((..(((.((((...)))).(((((((((.....(((((((......)))))))(((((.(((((....))))).....))))).....))))).)))).)))..))))......... ( -40.50) >DroSim_CAF1 2707 120 - 1 GGUCCGCUUCUUGGAGGCCAAACUGCAGCAGCACACGGAUCUGCUGUCCCAGAUUCAUGCCACAUCCGCCAGGAUGCAACAGGCAUCCUCCCUGCUGGUAGAAAGUAGGCCACCCACGCC ((((..(((.((((...)))).(((((((((.....(((((((......)))))))(((((.(((((....))))).....))))).....))))).)))).)))..))))......... ( -40.60) >DroYak_CAF1 2861 120 - 1 GGUACGCUACUUGGAGGCCAAAUUACAGCAGCACACGGAUCUGCUCUCCCAGAUUCAUGCCACCUCCGCCAGGAUGCAACAGGCAUCCUCCCUGCUGGCAGAAAGUGGACCACCAACGCC (((...((((((((((((.........)).(((...(((((((......))))))).)))...))))((((((((((.....)))))).......))))...))))))...)))...... ( -38.71) >DroAna_CAF1 3559 120 - 1 GGUACGCUACUUGGAGGCUAAACUACAGCAGCACACAGACCUAUUGUCACAGAUUCAUGCAACAUCCGCCAGGAUGCAGCAUGGAUCCUCGUUGAUAACGGACACGUCGCCUCCCACACC ............((((((.......((((........(((.....)))...(((((((((..(((((....)))))..)))))))))...))))...(((....))).))))))...... ( -39.80) >consensus GGUCCGCUACUUGGAGGCCAAACUGCAGCAGCACACGGAUCUGCUGUCCCAGAUUCAUGCCACAUCCGCCAGGAUGCAACAGGCAUCCUCCCUGCUGGCAGAAAGUAGGCCACCCACGCC ((((.(((..(((.((......)).))).)))....(((((((......))))))).(((((........(((((((.....)))))))......))))).......))))......... (-24.30 = -24.94 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:17 2006