Locus 90

Sequence ID 2L_DroMel_CAF1
Location 304,976 – 305,078
Length 102
Max. P 0.928439
window133 window134

overview

Window 3

Location 304,976 – 305,078
Length 102
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 85.37
Mean single sequence MFE -21.45
Consensus MFE -14.64
Energy contribution -17.95
Covariance contribution 3.31
Combinations/Pair 1.04
Mean z-score -2.55
Structure conservation index 0.68
SVM decision value 1.19
SVM RNA-class probability 0.928439
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 304976 102 + 22407834
UUAAC-CAUACAUACCUAUAAAGUAUGUAUGCUCUAGAAUGCUAUAUGUUGUAGAUCGUAAGCUAUAUGUUGUAGAUUCUUAAGCGCUAACAGCAACCACAAC
.....-.((((((((.......))))))))(((..(((((.(((((...(((((..(....))))))...))))))))))..)))((.....))......... ( -24.60)
>DroSim_CAF1 9586 102 + 1
UUAAC-CAUACAUACCUAUUAAGUAUGUAUGCUCUAGAAUGCUAUAUGUUGUAGAUCGUAAGCUAUAUGUUGUAGAUUCUUAAGCGCUAACAGCAACCACAAC
.....-.((((((((.......))))))))(((..(((((.(((((...(((((..(....))))))...))))))))))..)))((.....))......... ( -24.60)
>DroYak_CAF1 9885 102 + 1
UUAAC-CAUACAUACCUAUUAAGUAUGUAUGCUCUAGAAUGCUAUAUGUUGUAGAUUGUAAGCUAUAUGUUGUAGAUUCUUAAGCGCUAACAGCAACCAUAAC
.....-.((((((((.......))))))))(((..(((((.(((((...(((((........)))))...))))))))))..)))((.....))......... ( -24.50)
>DroAna_CAF1 12533 82 + 1
UUAACCCAUACAUACCUAUAUAAUAUGUAUGCUCUAGAAUGCUAUAUGUUGUAGAU---------------------CUUUAAGCGCUAACAGCAACAACAAC
..................(((((((((((.((........)))))))))))))...---------------------......((.......))......... ( -12.10)
>consensus
UUAAC_CAUACAUACCUAUAAAGUAUGUAUGCUCUAGAAUGCUAUAUGUUGUAGAUCGUAAGCUAUAUGUUGUAGAUUCUUAAGCGCUAACAGCAACCACAAC
.......((((((((.......))))))))(((..(((((.(((((...(((((........)))))...))))))))))..)))((.....))......... (-14.64 = -17.95 +   3.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 304,976 – 305,078
Length 102
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 85.37
Mean single sequence MFE -22.16
Consensus MFE -15.91
Energy contribution -15.97
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.82
Structure conservation index 0.72
SVM decision value 0.48
SVM RNA-class probability 0.753053
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 304976 102 - 22407834
GUUGUGGUUGCUGUUAGCGCUUAAGAAUCUACAACAUAUAGCUUACGAUCUACAACAUAUAGCAUUCUAGAGCAUACAUACUUUAUAGGUAUGUAUG-GUUAA
(((((((....(((.(((......................))).)))..))))))).............((.((((((((((.....))))))))))-.)).. ( -24.65)
>DroSim_CAF1 9586 102 - 1
GUUGUGGUUGCUGUUAGCGCUUAAGAAUCUACAACAUAUAGCUUACGAUCUACAACAUAUAGCAUUCUAGAGCAUACAUACUUAAUAGGUAUGUAUG-GUUAA
(((((((....(((.(((......................))).)))..))))))).............((.((((((((((.....))))))))))-.)).. ( -24.65)
>DroYak_CAF1 9885 102 - 1
GUUAUGGUUGCUGUUAGCGCUUAAGAAUCUACAACAUAUAGCUUACAAUCUACAACAUAUAGCAUUCUAGAGCAUACAUACUUAAUAGGUAUGUAUG-GUUAA
((((((((((.(((.(((......................))).))).....)))).))))))......((.((((((((((.....))))))))))-.)).. ( -23.15)
>DroAna_CAF1 12533 82 - 1
GUUGUUGUUGCUGUUAGCGCUUAAAG---------------------AUCUACAACAUAUAGCAUUCUAGAGCAUACAUAUUAUAUAGGUAUGUAUGGGUUAA
((((((((((..(....(.......)---------------------..)..))))).)))))....(((..((((((((((.....))))))))))..))). ( -16.20)
>consensus
GUUGUGGUUGCUGUUAGCGCUUAAGAAUCUACAACAUAUAGCUUACGAUCUACAACAUAUAGCAUUCUAGAGCAUACAUACUUAAUAGGUAUGUAUG_GUUAA
(((.(((.((((((............................................))))))..))).)))(((((((((.....)))))))))....... (-15.91 = -15.97 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:27 2006