Locus 898

Sequence ID 2L_DroMel_CAF1
Location 2,573,569 – 2,573,689
Length 120
Max. P 0.696784
window1451

overview

Window 1

Location 2,573,569 – 2,573,689
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.67
Mean single sequence MFE -45.67
Consensus MFE -29.71
Energy contribution -30.35
Covariance contribution 0.64
Combinations/Pair 1.22
Mean z-score -2.26
Structure conservation index 0.65
SVM decision value 0.34
SVM RNA-class probability 0.696784
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2573569 120 + 22407834
GAGGCCAACGGAGUUCGUUUUAAUGGCCACCUUGGUGGCCGACUGCAUCGCCUUGUUGGUCAUGCGGAUCUGCUGGCUCUUGUAGCGAGCCACCACCGUCUGUUUGCAGUUAAACAUCAU
...((.((((((............((((((....))))))((((((((.(((.....))).)))))).))((.((((((.......)))))).))...)))))).))............. ( -44.60)
>DroVir_CAF1 170 120 + 1
CAAACCACUGGCAUCCGUUUUAAUGGCCACCUUUGUGGCCACCUGCAUUGCCUUGUUGGUCAGCUUGAUUUGCUGGCAUUUGUAACGAGCCACCGUUGUCUCACGGCAAUUAAACAAUAU
.........((((...((.....(((((((....)))))))...))..)))).(((((((((((.......))))))..((((...(((.((....)).)))...)))).....))))). ( -35.10)
>DroPse_CAF1 49 120 + 1
GAGGCCGAGGGUAUUCGUUUUGAUGGACACCUUUGUGGCCGCCUGCAUGGCCUUGUUCGUGAGCCGUAUCUGCUGGCUCUUGUAUCGGGCCACCAAAGUCUGGGGGCAGUUGAACAUCAU
((((((((((((.(((((....))))).))))))..))))((((...((((((.((.((.(((((((....)).))))).)).)).))))))(((.....))))))).........)).. ( -46.50)
>DroEre_CAF1 163 120 + 1
CAGGCCAACGGAGUUGGUUUUGAUGGCCACCUUGGUGGCCGACUGCAUGGCCUUGUUGGUUAUGCGGAUCUGCUGGCUCUUGUAGCGAGCCACCACUGUCUGUUUGCAGUUGAACAUCAU
.((((((((...))))))))((((((((((....)))))(((((((((((((.....))))))((((((.((.((((((.......)))))).))..))))))..)))))))..))))). ( -52.60)
>DroYak_CAF1 89 120 + 1
CAGGCCAACGGAGUUGGUUUUGAUGGCCACCUUGGUGGCCGACUGCAUCGCCUUGUUGGUUAUGCGGAUCUGCUGGCUCUUGUAGCGAGCCACCACCGUCUGCUUGCAGUUGAACAUCAU
.((((((((...))))))))((((((((((....)))))((((((((..(((.....)))...((((((.((.((((((.......)))))).))..)))))).))))))))..))))). ( -52.10)
>DroPer_CAF1 91 120 + 1
UAGGCCGAGGUUAUUCGUUUUGAUGGACACCUUUGUGGCCGCCUGCAUGGCCUUGUUCGUGAGCCGUAUCUGCUGGCUCUUGUAUCGGGCCACCAAAGUCUGGGGGCAGUUGAACAUCAU
..(((((((((..(((((....))))).)))))...))))((((...((((((.((.((.(((((((....)).))))).)).)).))))))(((.....)))))))............. ( -43.10)
>consensus
CAGGCCAACGGAAUUCGUUUUGAUGGCCACCUUGGUGGCCGACUGCAUGGCCUUGUUGGUCAGCCGGAUCUGCUGGCUCUUGUAGCGAGCCACCACAGUCUGGUGGCAGUUGAACAUCAU
................((((...(((((((....))))))).((((...(((.....)))...((((((.((.((((((.......)))))).))..))))))..))))..))))..... (-29.71 = -30.35 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:15 2006