Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,563,115 – 2,563,207 |
Length | 92 |
Max. P | 0.786242 |
Location | 2,563,115 – 2,563,207 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 79.13 |
Mean single sequence MFE | -29.20 |
Consensus MFE | -20.64 |
Energy contribution | -20.92 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.33 |
Mean z-score | -1.47 |
Structure conservation index | 0.71 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786242 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2563115 92 - 22407834 AGAACGGAGCGGCGAGUGUCCUUACCAAGCGAGGAUGCUUCCUGCCCUUCGGUGAUGGACCUCGUAUUUGCUUAGGUAAAUCCCCAACCAUA .(((.((.((((.((((((((((.......)))))))))).)))))))))((.(((..((((.((....))..))))..))).))....... ( -32.20) >DroGri_CAF1 205695 91 - 1 AUAAUGGUGCGGCAAGUGAGUAUACCAAGCGGGGCUGCUUGUUGGCCUUUGGUGAUGGACCACGCAUUUGUUUGGGUAAGUUUUCGCAUGG- ......(((((((.((..((((..((.....))..))))..)).)))...((.(((..(((..((....))...)))..))).))))))..- ( -24.80) >DroSec_CAF1 142556 92 - 1 ACAACGGAGCAGCAAGUGUCCUCAACAAACGAGGAUGCUUCCUGCCCUUCGGCGAUGGUCCUCGUAUAUGUUUAGGUGAAUCCCCAACCAUA .....((.((((.((((((((((.......)))))))))).))))))...((.(((...(((.(.......).)))...))).))....... ( -29.50) >DroSim_CAF1 147088 92 - 1 ACAACGGAGCAGCGAGUGUCCUCAACAAACGAGGAUGCUUCCUGCCCUUCGGUGAUGGUCCUCGAAUUUGCUUAGGUGAAUCCCCAGCUAUA .....((.((((.((((((((((.......)))))))))).))))))(((((.(.....).)))))...(((..((.....))..))).... ( -30.40) >DroEre_CAF1 146987 92 - 1 AGAACGGAGCGGCGAGUGUCCUCAACAAACGAGGAUGCUUCCUGCCCUUCGGCGAUGGUCCUCGUAUAUGUUUAGGUGAGUCCAGAAACAUU .(((.((.((((.((((((((((.......)))))))))).)))))))))(....(((..((((..((....))..)))).)))....)... ( -31.60) >DroYak_CAF1 146860 85 - 1 AGAACGGAGCGGCGAGUGUCCUUACCAAACGAGGAUGCUUCCUGCCCUUCGGCGAUGGUCCUCGUAUUUGUUUAGGUGAAU-------GAAU .(((.((.((((.((((((((((.......)))))))))).))))))))).((((......))))(((..(((....))).-------.))) ( -26.70) >consensus AGAACGGAGCGGCGAGUGUCCUCAACAAACGAGGAUGCUUCCUGCCCUUCGGCGAUGGUCCUCGUAUUUGUUUAGGUGAAUCCCCAACCAUA .....((.((((.((((((((((.......)))))))))).))))))...((.(((...(((...........)))...))).))....... (-20.64 = -20.92 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:14 2006